## Summary
This PR updates the `FileCache` to include an optional `NotebookIndex`
to support caching for Jupyter Notebooks.
We only require the index to compute the diagnostics and thus we don't
really need to store the entire `Notebook` on the `Diagnostics` struct.
This means we only need the index to be stored in the cache to
reconstruct the `Diagnostics`.
## Test Plan
Update an existing test case to run over the fixtures under
`ruff_notebook` crate where there are multiple Jupyter Notebook.
Locally, the following commands were run in order:
1. Remove the cache: `rm -rf .ruff_cache`
2. Run without cache: `cargo run --bin ruff -- check --isolated
crates/ruff_notebook/resources/test/fixtures/jupyter/unused_variable.ipynb
--no-cache`
3. Run with cache: `cargo run --bin ruff -- check --isolated
crates/ruff_notebook/resources/test/fixtures/jupyter/unused_variable.ipynb`
4. Check whether the `.ruff_cache` directory was created or not
5. Run with cache again and verify: `cargo run --bin ruff -- check
--isolated
crates/ruff_notebook/resources/test/fixtures/jupyter/unused_variable.ipynb`
## Benchmarks
https://github.com/astral-sh/ruff/pull/6863#issuecomment-1715675186fixes: #6671
## Summary
This PR moves `ruff/jupyter` into its own `ruff_notebook` crate. Beyond
the move itself, there were a few challenges:
1. `ruff_notebook` relies on the source map abstraction. I've moved the
source map into `ruff_diagnostics`, since it doesn't have any
dependencies on its own and is used alongside diagnostics.
2. `ruff_notebook` has a couple tests for end-to-end linting and
autofixing. I had to leave these tests in `ruff` itself.
3. We had code in `ruff/jupyter` that relied on Python lexing, in order
to provide a more targeted error message in the event that a user saves
a `.py` file with a `.ipynb` extension. I removed this in order to avoid
a dependency on the parser, it felt like it wasn't worth retaining just
for that dependency.
## Test Plan
`cargo test`
## Summary
Returns an exit code of 1 if any files would be reformatted:
```
ruff on charlie/format-check:main [$?⇡] is 📦 v0.0.286 via 🐍 v3.11.2 via 🦀 v1.72.0
❯ cargo run -p ruff_cli -- format foo.py --check
Compiling ruff_cli v0.0.286 (/Users/crmarsh/workspace/ruff/crates/ruff_cli)
Finished dev [unoptimized + debuginfo] target(s) in 1.69s
Running `target/debug/ruff format foo.py --check`
warning: `ruff format` is a work-in-progress, subject to change at any time, and intended only for experimentation.
1 file would be reformatted
ruff on charlie/format-check:main [$?⇡] is 📦 v0.0.286 via 🐍 v3.11.2 via 🦀 v1.72.0 took 2s
❯ echo $?
1
```
Closes#6966.
**Summary** Add recursive formatting based on `ruff check` file
discovery for `ruff format`, as a prototype for the formatter alpha.
This allows e.g. `format ../projects/django/`. It's still lacking
support for any settings except line length.
Note just like the existing `ruff format` this will become part of the
production build, i.e. you'll be able to use it - hidden by default and
with a prominent warning - with `ruff format .` after the next release.
Error handling works in my manual tests (the colors do also work):
```
$ target/debug/ruff format scripts/
warning: `ruff format` is a work-in-progress, subject to change at any time, and intended for internal use only.
```
(the above changes `add_rule.py` where we have the wrong bin op
breaking)
```
$ target/debug/ruff format ../projects/django/
warning: `ruff format` is a work-in-progress, subject to change at any time, and intended for internal use only.
Failed to format /home/konsti/projects/django/tests/test_runner_apps/tagged/tests_syntax_error.py: source contains syntax errors: ParseError { error: UnrecognizedToken(Name { name: "syntax_error" }, None), offset: 131, source_path: "<filename>" }
```
```
$ target/debug/ruff format a
warning: `ruff format` is a work-in-progress, subject to change at any time, and intended for internal use only.
Failed to read /home/konsti/ruff/a/d.py: Permission denied (os error 13)
```
**Test Plan** Missing! I'm not sure if it's worth building tests at this
stage or how they should look like.
Reimplements https://github.com/astral-sh/ruff/pull/3104
Closes https://github.com/astral-sh/ruff/issues/5726
Note that we will generate the hash for a cache key twice in normal
operation. Once to check for the cached item and again to update the
cache. We could optimize this by generating the hash once in
`diagnostics::lint_file` and passing the `u64` into `get` and `update`.
We'd probably want to wrap it in a `CacheKeyHash` enum for type safety.
## Test plan
Unit tests for Windows and Unix.
Manual test with case from issue
```
❯ touch fake.py
❯ chmod +x fake.py
❯ ./target/debug/ruff --select EXE fake.py
fake.py:1:1: EXE002 The file is executable but no shebang is present
Found 1 error.
❯ chmod -x fake.py
❯ ./target/debug/ruff --select EXE fake.py
```
## Summary
It can happen that we can't read a file (a python file, a jupyter
notebook or pyproject.toml), which needs to be handled and handled
consistently for all file types. Instead of using `Err` or `error!`, we
emit E602 with the io error as message and continue. This PR makes sure
we handle all three cases consistently, emit E602.
I'm not convinced that it should be possible to disable io errors, but
we now handle the regular case consistently and at least print warning
consistently.
I went with `warn!` but i can change them all to `error!`, too.
It also checks the error case when a pyproject.toml is not readable. The
error message is not very helpful, but it's now a bit clearer that
actually ruff itself failed instead vs this being a diagnostic.
## Examples
This is how an Err of `run` looks now:

With an unreadable file and `IOError` disabled:

(we lint zero files but count files before linting not during so we exit
0)
I'm not sure if it should (or if we should take a different path with
manual ExitStatus), but this currently also triggers when `files` is
empty:

## Test Plan
Unix only: Create a temporary directory with files with permissions
`000` (not readable by the owner) and run on that directory. Since this
breaks the assumptions of most of the test code (single file, `ruff`
instead of `ruff_cli`), the test code is rather cumbersome and looks a
bit misplaced; i'm happy about suggestions to fit it in closer with the
other tests or streamline it in other ways. I added another test for
when the entire directory is not readable.
## Summary
Experimental release for Jupyter Notebook integration.
Currently, this requires a user to explicitly opt-in using the
[include](https://beta.ruff.rs/docs/settings/#include) configuration:
```toml
[tool.ruff]
include = ["*.py", "*.pyi", "**/pyproject.toml", "*.ipynb"]
```
Or, a user can pass in the file directly:
```sh
ruff check path/to/notebook.ipynb
```
For known limitations, please refer #5188
## Test Plan
Following command should work without the `--all-features` flag:
```sh
cargo dev round-trip /path/to/notebook.ipynb
```
Following command should work with the above config file along with
`select = ["ALL"]`:
```sh
cargo run --bin ruff -- check --no-cache --config=../test-repos/openai-cookbook/pyproject.toml --fix ../test-repos/openai-cookbook/
```
Passing the Jupyter notebook directly:
```sh
cargo run --bin ruff -- check --no-cache --isolated --select=ALL --fix ../test-repos/openai-cookbook/examples/Classification_using_embeddings.ipynb
```
## Summary
This changes the caching design from one cache file per source file, to
one cache file per package. This greatly reduces the amount of cache
files that are opened and written, while maintaining roughly the same
(combined) size as bincode is very compact.
Below are some very much not scientific performance tests. It uses
projects/sources to check:
* small.py: single, 31 bytes Python file with 2 errors.
* test.py: single, 43k Python file with 8 errors.
* fastapi: FastAPI repo, 1134 files checked, 0 errors.
Source | Before # files | After # files | Before size | After size
-------|-------|-------|-------|-------
small.py | 1 | 1 | 20 K | 20 K
test.py | 1 | 1 | 60 K | 60 K
fastapi | 1134 | 518 | 4.5 M | 2.3 M
One question that might come up is why fastapi still has 518 cache files
and not 1? That is because this is using the existing package
resolution, which sees examples, docs, etc. as separate from the "main"
source code (in the fastapi directory in the repo). In this future it
might be worth consider switching to a one cache file per repo strategy.
This new design is not perfect and does have a number of known issues.
First, like the old design it doesn't remove the cache for a source file
that has been (re)moved until `ruff clean` is called.
Second, this currently uses a large mutex around the mutation of the
package cache (e.g. inserting result). This could be (or become) a
bottleneck. It's future work to test and improve this (if needed).
Third, currently the packages and opened and stored in a sequential
loop, this could be done parallel. This is also future work.
## Test Plan
Run `ruff check` (with caching enabled) twice on any Python source code
and it should produce the same results.
* Use dummy verbatim formatter for all nodes
* Use new formatter infrastructure in CLI and test
* Expose the new formatter in the CLI
* Merge import blocks