Two low-hanging fruits as optimizations for version parsing: A fast path
for release only versions and removing the regex from version specifiers
(still calling into version's parsing regex if required). This enables
optimizing the serde format since we now see the serde part instead of
only PEP 440 parsing. I intentionally didn't rewrite the full PEP 440 at
this step.
```console
$ hyperfine --warmup 5 --runs 50 "target/profiling/puffin pip-compile scripts/requirements/transformers-extras.in" "target/profiling/main pip-compile scripts/requirements/transformers-extras.in"
Benchmark 1: target/profiling/puffin pip-compile scripts/requirements/transformers-extras.in
Time (mean ± σ): 217.1 ms ± 3.2 ms [User: 194.0 ms, System: 55.1 ms]
Range (min … max): 211.0 ms … 228.1 ms 50 runs
Benchmark 2: target/profiling/main pip-compile scripts/requirements/transformers-extras.in
Time (mean ± σ): 276.7 ms ± 5.7 ms [User: 252.4 ms, System: 54.6 ms]
Range (min … max): 268.9 ms … 303.5 ms 50 runs
Summary
target/profiling/puffin pip-compile scripts/requirements/transformers-extras.in ran
1.27 ± 0.03 times faster than target/profiling/main pip-compile scripts/requirements/transformers-extras.in
```
---------
Co-authored-by: Andrew Gallant <andrew@astral.sh>
## Summary
This PR enables users to express relative dependencies via environment
variables. Like pip, PDM, Hatch, Rye, and others, we now allow users to
express dependencies like:
```text
flask @ file://${PROJECT_ROOT}/flask-3.0.0-py3-none-any.whl
```
In the compiled requirements file, we'll also preserve the unexpanded
environment variable.
Closes https://github.com/astral-sh/puffin/issues/592.
## Summary
This PR adds a `VerbatimUrl` struct to preserve verbatim URLs throughout
the resolution and installation pipeline. In short, alongside the parsed
`Url`, we also keep the URL as written by the user. This enables us to
display the URL exactly as written by the user, rather than the
serialized path that we use internally.
This will be especially useful once we start expanding environment
variables since, at that point, we'll be able to write the version of
the URL that includes the _unexpected_ environment variable to the
output file.
## Summary
When resolving `transformers[tensorboard]`, the `[tensorboard]` extra
doesn't exist. Previously, we returned "unknown" dependencies for this
variant, which leads the resolution to try all versions, then fail. This
PR instead warns, but returns the base dependencies for the package,
which matches `pip`. (Poetry doesn't even warn, it just proceeds as
normal.)
Arguably, it would be better to return a custom incompatibility here and
then propagate... But this PR is better than the status quo, and I don't
know if we have support for that behavior yet...? (\cc @zanieb)
Closes#386.
Closes https://github.com/astral-sh/puffin/issues/423.
## Summary
This PR enables overrides to be passed to `pip-compile` and
`pip-install` via a new `--overrides` flag.
When overrides are provided, we effectively replace any requirements
that are overridden with the overridden versions. This is applied at all
depths of the tree.
The merge semantics are such that we replace _all_ requirements of a
package with _all_ requirements from the overrides files. So, for
example, if a package declares:
```
foo >= 1.0; python_version < '3.11'
foo < 1.0; python_version >= '3.11'
```
And the user provides an override like:
```
foo >= 2.0
```
Then _both_ of the `foo` requirements in the package will be replaced
with the override.
If instead, the user provided an override like:
```
foo >= 2.0; python_version < '3.11'
foo < 3.0; python_version >= '3.11'
```
Then we'd replace _both_ of the original `foo` requirements with both of
these overrides. (In technical terms, for each package in the
requirements file, we flat-map over its overrides.)
Closes https://github.com/astral-sh/puffin/issues/511.
## Summary
Now, `puffin_warnings::warn_once` and `puffin_warnings::warn` will go to
`stderr`, as long as the user isn't running under `--quiet`. Previously,
these went through `tracing`, and so were only visible when running
under `--verbose`.
## Summary
Now, after running `pip-install`, we validate that the set of installed
packages is consistent -- that is, that we don't have any packages that
are missing dependencies, or incompatible versions of installed
dependencies.
## Summary
At present, when performing a `pip-install`, we first do a resolution,
then take the set of requirements and basically run them through our
`pip-sync`, which itself includes re-resolving the dependencies to get a
specific `Dist` for each package. (E.g., the set of requirements might
say `flask==3.0.0`, but the installer needs a specific _wheel_ or source
distribution to install.)
This PR removes this second resolution by exposing the set of pinned
packages from the resolution. The main challenge here is that we have an
optimization in the resolver such that we let the resolver read metadata
from an incompatible wheel as long as a source distribution exists for a
given package. This lets us avoid building source distributions in the
resolver under the assumption that we'll be able to install the package
later on, if needed. As such, the resolver now needs to track the
resolution and installation filenames separately.
## Summary
When running `puffin pip-install`, we should respect versions that are
already installed in the environment. For example, if you run `puffin
pip-install flask==2.0.0` and then `puffin pip-install flask`, we should
avoid upgrading Flask. The most natural way to model this is to mark
them as "preferences".
(It's not enough to just filter those requirements out prior to
resolving, since we may not have the _dependencies_ of those packages
installed. We _could_ recursively verify this across the
`site-packages`, but that would be a larger PR.)
## Summary
This PR adds a `pip-install` command that operates like, well, `pip
install`. In short, it resolves the provided dependency, then makes sure
they're all installed in the environment. The primary differences with
`pip-sync` are that (1) `pip-sync` ignores dependencies, and assumes
that the packages represent a complete set; and (2) `pip-sync`
uninstalls any unlisted packages.
There are a bunch of TODOs that I'll resolve in subsequent PRs.
Closes https://github.com/astral-sh/puffin/issues/129.
## Summary
At present, we have two separate phases within the installation pipeline
related to populating wheels into the cache. The first phase downloads
the distribution, and then builds any source distributions into wheels;
the second phase unzips all the built wheels into the cache.
This PR merges those two phases into one, such that we seamlessly
download, build, and unzip wheels in one pass. This is more efficient,
since we can start unzipping while we build. It also ensures that if the
install _fails_ partway through, we don't end up with a bunch of
downloaded wheels that we never had a chance to unzip. The code is also
much simpler.
The main downside is that the user-facing feedback isn't as granular,
since we only have one phase and one progress bar for what was
originally three distinct phases.
Closes https://github.com/astral-sh/puffin/issues/571.
## Test Plan
I ran the benchmark script on two separate requirements files, and saw a
7% and 31% speedup respectively:
```text
+ TARGET=./scripts/benchmarks/requirements.txt
+ hyperfine --runs 100 --warmup 10 --prepare 'virtualenv --clear .venv' './target/release/main pip-sync ./scripts/benchmarks/requirements.txt --no-cache' --prepare 'virtualenv --clear .venv' './target/release/puffin pip-sync ./scripts/benchmarks/requirements.txt --no-cache'
Benchmark 1: ./target/release/main pip-sync ./scripts/benchmarks/requirements.txt --no-cache
Time (mean ± σ): 269.4 ms ± 33.0 ms [User: 42.4 ms, System: 117.5 ms]
Range (min … max): 221.7 ms … 446.7 ms 100 runs
Benchmark 2: ./target/release/puffin pip-sync ./scripts/benchmarks/requirements.txt --no-cache
Time (mean ± σ): 250.6 ms ± 28.3 ms [User: 41.5 ms, System: 127.4 ms]
Range (min … max): 207.6 ms … 336.4 ms 100 runs
Summary
'./target/release/puffin pip-sync ./scripts/benchmarks/requirements.txt --no-cache' ran
1.07 ± 0.18 times faster than './target/release/main pip-sync ./scripts/benchmarks/requirements.txt --no-cache'
```
```text
+ TARGET=./scripts/benchmarks/requirements-large.txt
+ hyperfine --runs 100 --warmup 10 --prepare 'virtualenv --clear .venv' './target/release/main pip-sync ./scripts/benchmarks/requirements-large.txt --no-cache' --prepare 'virtualenv --clear .venv' './target/release/puffin pip-sync ./scripts/benchmarks/requirements-large.txt --no-cache'
Benchmark 1: ./target/release/main pip-sync ./scripts/benchmarks/requirements-large.txt --no-cache
Time (mean ± σ): 5.053 s ± 0.354 s [User: 1.413 s, System: 6.710 s]
Range (min … max): 4.584 s … 6.333 s 100 runs
Benchmark 2: ./target/release/puffin pip-sync ./scripts/benchmarks/requirements-large.txt --no-cache
Time (mean ± σ): 3.845 s ± 0.225 s [User: 1.364 s, System: 6.970 s]
Range (min … max): 3.482 s … 4.715 s 100 runs
Summary
'./target/release/puffin pip-sync ./scripts/benchmarks/requirements-large.txt --no-cache' ran
```
## Summary
This PR adds two flags to `pip-sync`: `--reinstall`, and
`--reinstall-package [PACKAGE]`. The former reinstalls all packages in
the requirements, while the latter can be repeated and reinstalls all
specified packages.
For our purposes, a reinstall includes (1) purging the cache, and (2)
marking any already-installed versions as extraneous.
Closes#572.
Closes https://github.com/astral-sh/puffin/issues/271.
## Summary
This PR enables `puffin clean` to accept package names as command line
arguments, and selectively purge entries from the cache tied to the
given package.
Relate to #572.
## Test Plan
Modified all the caching tests to run an additional step to (1) purge
the cache, and (2) re-install the package.
Also ensures that we filter out any incompatible requirements when
building the install plan. In general, we assume that requirements were
generated by `pip-compile`, in which case all requirements should be
compatible and there should be no duplicates; but we should handle this
case gracefully.
Closes https://github.com/astral-sh/puffin/issues/582.
This PR adds caching support for built wheels in the installer.
Specifically, the `RegistryWheelIndex` now indexes both downloaded and
built wheels (from registries), and we have a new `BuiltWheelIndex` that
takes a subdirectory and returns the "best-matching" compatible wheel.
Closes#570.
Adds a few more tests for re-installs with various kinds of source
distributions, and changes the tests to use packages that we can safely
import (via `check_command`) for extra validation.
Once we properly respect cached built wheels, we should expect these
snapshots to change, since we'll no longer download and re-build
unnecessarily.
## Summary
This enables users to rely on yanked versions via explicit `==` markers,
which is necessary in some projects (and, in my opinion, reasonable).
Closes#551.
## Summary
Allows, e.g., `--python-version 3.7` or `--python-version 3.7.9`. This
was also feedback I received in the original PR.
Closes https://github.com/astral-sh/puffin/issues/533.
## Summary
This PR modifies `puffin-build` to be closer in behavior to
[pip](a15dd75d98/src/pip/_internal/pyproject.py (L53))
and
[build](de5b44b0c2/src/build/__init__.py (L94)).
Specifically, if a project contains a `[build-system]` field, but no
`build-backend`, we now perform a PEP 517 build (instead of using
`setup.py` directly) _and_ respect the `requires` of the
`[build-system]`. Without this change, we were failing to build source
distributions for packages like `ujson`.
Closes#527.
---------
Co-authored-by: konstin <konstin@mailbox.org>
Remove built wheels alongside their metadata when their index source
dist or url source dist changed. For git source dists, we currently
don't clear the previous build but use a new directory (not sure what's
right here - are there any generic cache GC approaches out there? I've
seen that e.g. spotify keeps its cache at 10GB max, but i also haven't
seen any reusable, well tested approaches for this). Path distributions
are unchanged (#478).
I like the structure of metadata alongside the wheel for cache
invalidation, i'll try to do that for `wheels-v0`/`wheel-metadata-v0`
too. (The unzipped wheels afaik currently lack cache invalidation when
the remote changed.) This should give is roughly the same structure for
wheel and built wheels and a very similar pattern of invalidation.
Previously, when installing a package we would delete the target
directory before copying (or linking) the contents of the package.
However, this means that we do not properly support namespace packages
which can share a target directory. Instead the last package to be
installed would be override existing packages. Since we install packages
in parallel, this could result in a race condition where the target
directory already exists which is not allowed when using `clonefile`.
See example error in #515.
c7e63d2dce
provides a regression test for this — it fails on `main`.
Here, we implement a recursive merge when the target directory already
exists. Both packages will be installed into the same directory. We no
longer delete the target directory, which seems okay since we uninstall
packages before installing now.
When files conflict, we will likely throw an error still. The correct
behavior to implement in this case is unclear, as if we just take "first
write wins" or "last write wins" we could end up with some files from
one package and some from another resulting in two broken packages. A
possible solution here is to lock the target directories while copying.
## Summary and motivation
For a given source dist, we store the metadata of each wheel built
through it in `built-wheel-metadata-v0/pypi/<source dist
filename>/metadata.json`. During resolution, we check the cache status
of the source dist. If it is fresh, we check `metadata.json` for a
matching wheel. If there is one we use that metadata, if there isn't, we
build one. If the source is stale, we build a wheel and override
`metadata.json` with that single wheel. This PR thereby ties the local
built wheel metadata cache to the freshness of the remote source dist.
This functionality is available through `SourceDistCachedBuilder`.
`puffin_installer::Builder`, `puffin_installer::Downloader` and
`Fetcher` are removed, instead there are now `FetchAndBuild` which calls
into the also new `SourceDistCachedBuilder`. `FetchAndBuild` is the new
main high-level abstraction: It spawns parallel fetching/building, for
wheel metadata it calls into the registry client, for wheel files it
fetches them, for source dists it calls `SourceDistCachedBuilder`. It
handles locks around builds, and newly added also inter-process file
locking for git operations.
Fetching and building source distributions now happens in parallel in
`pip-sync`, i.e. we don't have to wait for the largest wheel to be
downloaded to start building source distributions.
In a follow-up PR, I'll also clear built wheels when they've become
stale.
Another effect is that in a fully cached resolution, we need neither zip
reading nor email parsing.
Closes#473
## Source dist cache structure
Entries by supported sources:
* `<build wheel metadata cache>/pypi/foo-1.0.0.zip/metadata.json`
* `<build wheel metadata
cache>/<sha256(index-url)>/foo-1.0.0.zip/metadata.json`
* `<build wheel metadata
cache>/url/<sha256(url)>/foo-1.0.0.zip/metadata.json`
But the url filename does not need to be a valid source dist filename
(<https://github.com/search?q=path%3A**%2Frequirements.txt+master.zip&type=code>),
so it could also be the following and we have to take any string as
filename:
* `<build wheel metadata
cache>/url/<sha256(url)>/master.zip/metadata.json`
Example:
```text
# git source dist
pydantic-extra-types @ git+https://github.com/pydantic/pydantic-extra-types.git
# pypi source dist
django_allauth==0.51.0
# url source dist
werkzeug @ ff1904eb5e/werkzeug-3.0.1.tar.gz
```
will be stored as
```text
built-wheel-metadata-v0
├── git
│ └── 5c56bc1c58c34c11
│ └── 843b753e9e8cb74e83cac55598719b39a4d5ef1f
│ └── metadata.json
├── pypi
│ └── django-allauth-0.51.0.tar.gz
│ └── metadata.json
└── url
└── 6781bd6440ae72c2
└── werkzeug-3.0.1.tar.gz
└── metadata.json
```
The inside of a `metadata.json`:
```json
{
"data": {
"django_allauth-0.51.0-py3-none-any.whl": {
"metadata-version": "2.1",
"name": "django-allauth",
"version": "0.51.0",
...
}
}
}
```
## Summary
This PR adds support for local path dependencies. The approach mostly
just falls out of our existing approach and infrastructure for Git and
URL dependencies.
Closes https://github.com/astral-sh/puffin/issues/436. (We'll open a
separate issue for editable installs.)
## Test Plan
Added `pip-compile` tests that pre-download a wheel or source
distribution, then install it via local path.
Extends #424 with support for URL dependency incompatibilities.
Requires changes to `miette` to prevent URLs from being word wrapped;
accepted upstream in https://github.com/zkat/miette/pull/321
Addresses
https://github.com/astral-sh/puffin/issues/309#issuecomment-1792648969
Similar to #338 this throws an error when merging versions results in an
empty set. Instead of propagating that error, we capture it and return a
new dependency type of `Unusable`. Unusable dependencies are a new
incompatibility kind which includes an arbitrary "reason" string that we
present to the user. Adding a new incompatibility kind requires changes
to the vendored pubgrub crate.
We could use this same incompatibility kind for conflicting urls as in
#284 which should allow the solver to backtrack to another valid version
instead of failing (see #425).
Unlike #383 this does not require changes to PubGrub's package mapping
model. I think in the long run we'll want PubGrub to accept multiple
versions per package to solve this specific issue, but we're interested
in it being merged upstream first. This pull request is just using the
issue as a simple case to explore adding a new incompatibility type.
We may or may not be able convince them to add this new incompatibility
type upstream. As discussed in
https://github.com/pubgrub-rs/pubgrub/issues/152, we may want a more
general incompatibility kind instead which can be used for arbitrary
problems. An upstream pull request has been opened for discussion at
https://github.com/pubgrub-rs/pubgrub/pull/153.
Related to:
- https://github.com/pubgrub-rs/pubgrub/issues/152
- #338
- #383
---------
Co-authored-by: konsti <konstin@mailbox.org>
This works by filtering out files with a more recent upload time, so if
the index you use does not provide upload times, the results might be
inaccurate. pypi provides upload times for all files. This is, the field
is non-nullable in the warehouse schema, but the simple API PEP does not
know this field.
If you have only pypi dependencies, this means deterministic,
reproducible(!) resolution. We could try doing the same for git repos
but it doesn't seem worth the effort, i'd recommend pinning commits
since git histories are arbitrarily malleable and also if you care about
reproducibility and such you such not use git dependencies but a custom
index.
Timestamps are given either as RFC 3339 timestamps such as
`2006-12-02T02:07:43Z` or as UTC dates in the same format such as
`2006-12-02`. Dates are interpreted as including this day, i.e. until
midnight UTC that day. Date only is required to make this ergonomic and
midnight seems like an ergonomic choice.
In action for `pandas`:
```console
$ target/debug/puffin pip-compile --exclude-newer 2023-11-16 target/pandas.in
Resolved 6 packages in 679ms
# This file was autogenerated by Puffin v0.0.1 via the following command:
# target/debug/puffin pip-compile --exclude-newer 2023-11-16 target/pandas.in
numpy==1.26.2
# via pandas
pandas==2.1.3
python-dateutil==2.8.2
# via pandas
pytz==2023.3.post1
# via pandas
six==1.16.0
# via python-dateutil
tzdata==2023.3
# via pandas
$ target/debug/puffin pip-compile --exclude-newer 2022-11-16 target/pandas.in
Resolved 5 packages in 655ms
# This file was autogenerated by Puffin v0.0.1 via the following command:
# target/debug/puffin pip-compile --exclude-newer 2022-11-16 target/pandas.in
numpy==1.23.4
# via pandas
pandas==1.5.1
python-dateutil==2.8.2
# via pandas
pytz==2022.6
# via pandas
six==1.16.0
# via python-dateutil
$ target/debug/puffin pip-compile --exclude-newer 2021-11-16 target/pandas.in
Resolved 5 packages in 594ms
# This file was autogenerated by Puffin v0.0.1 via the following command:
# target/debug/puffin pip-compile --exclude-newer 2021-11-16 target/pandas.in
numpy==1.21.4
# via pandas
pandas==1.3.4
python-dateutil==2.8.2
# via pandas
pytz==2021.3
# via pandas
six==1.16.0
# via python-dateutil
```
Previously, we were assuming that `which <python>` return the path to
the python executable. This is not true when using pyenv shims, which
are bash scripts. Instead, we have to use `sys.executable`. Luckily,
we're already querying the python interpreter and can do it in that
pass.
We are also not allowed to cache the execution of the python interpreter
through the shim because pyenv might change the target. As a heuristic,
we check whether `sys.executable`, the real binary, is the same our
canonicalized `which` result.
---------
Co-authored-by: Zanie Blue <contact@zanie.dev>
## Summary
This PR implements logic to sort wheels by priority, where priority is
defined as preferring more "specific" wheels over less "specific"
wheels. For example, in the case of Black, my machine now selects
`black-23.11.0-cp311-cp311-macosx_11_0_arm64.whl`, whereas sorting by
lowest priority instead gives me `black-23.11.0-py3-none-any.whl`.
As part of this change, I've also modified the resolver to fallback to
using incompatible wheels when determining package metadata, if no
compatible wheels are available.
The `VersionMap` was also moved out of `resolver.rs` and into its own
file with a wrapper type, for clarity.
Closes https://github.com/astral-sh/puffin/issues/380.
Closes https://github.com/astral-sh/puffin/issues/421.
The pip compile test now explicitly set their python version and `puffin
venv` resolves e.g. `python3.12` correctly now. The venv creation is
moved to a shared method
Implement two behaviors for yanked versions:
* During `pip-compile`, yanked versions are filtered out entirely, we
currently treat them is if they don't exist. This is leads to confusing
error messages because a version that does exist seems to have suddenly
disappeared.
* During `pip-sync`, we warn when we fetch a remote distribution and it
has been yanked. We currently don't warn on cached or installed
distributions that have been yanked.
Filter out source dists and wheels whose `requires-python` from the
simple api is incompatible with the current python version.
This change showed an important problem: When we use a fake python
version for resolving, building source distributions breaks down because
we can only build with versions we actually have.
This change became surprisingly big. The tests now require python 3.7 to
be installed, but changing that would mean an even bigger change.
Fixes#388
## Summary
It looks like, when you install `pip`, it includes a bunch of
`__pycache__` directories in the RECORD file (although these directories
don't exist until you run `pip`). Our uninstaller assumed that the
RECORD file only contained _files_.
Closes https://github.com/astral-sh/puffin/issues/389.
## Summary
Low-priority but fun thing to end the day. You can now pass
`--target-version py37`, and we'll generate a resolution for Python 3.7.
See: https://github.com/astral-sh/puffin/issues/183.
