build_reconstruction_obligation_ledger reported a bundle with duplicate
record IDs, or a reviewed obligation citing Evidence absent from the
bundle, as unreadable_output and pointed callers at rea doctor. Both are
caller input mistakes.
Throw dedicated TypeError subclasses at those checks and map them to
workflow input errors, following the NonCanonicalEvidenceBundleError
approach from #3219 so unrelated TypeErrors stay protocol failures.
Fixes#4444
Normalize client identities once in the shared workflow while preserving first-selected order. Keep planning, readiness, default skill selection and configuration application on the same unique list.
Cover duplicate selections in direct workflow tests and an isolated compiled CLI preview/apply/rerun journey. Refs morluto/rea#3847.
Fixes#4379.
Observe cancellation after file metadata, verified descriptor closure and recovered scope cleanup. Retain completed physical read outcomes and acquired-file digests under cancellation; preserve original failures and exact cleanup owners when close fails.
Bind cancellation markers to their verified owner so raw readers preserve nested callback outcomes and exact caller reasons. Reuse one ADB partial-result mapper for file, package and bugreport acquisition.
Validated with 570 related tests, source/docs checks, real Linux filesystem cancellation/cleanup/nesting probes and actual public CLI/MCP Evidence workflows.
Resolve stable local constant BrowserWindow options with retained provenance and shared early-exit mutation queries. Preserve source ordering and unknown results for relevant mutations or escapes.
Includes real Joplin correctness/cost receipts and regression coverage.
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
* fix(application): retain completed evidence through cancellation
Validate completed provider reports before classifying cancellation and preserve Evidence and captured diagnostics. Share MCP recording and delivery across custom observation handlers. Add source-owned completion and public SDK recording controls. Refs #3923, #3927, #4261.
* fix(wasm): retain final observations through cancellation
Keep completed Evidence after finalization and through CLI/MCP delivery. Preserve output and cleanup failure precedence. Refs #4254.
* fix(browser): retain final observations and forward cancellation
Classify final CDP detach and completed scenario cleanup at the provider boundary. Translate completed partials into canonical Evidence for MCP recording, and forward CLI cancellation to passive Electron tools. Refs #4255, #4256, #4257.
* fix(ghidra): isolate cancellation of shared startup waiters
Keep startup group-owned while each caller has an independent abortable wait. Await final-owner cleanup and preserve cleanup facts before retrying. Reuse the shared abortable promise helper. Refs #3983.
* fix(mcp): keep shutdown registrations until cleanup succeeds
Retain repeated event requests while unresolved owners need cleanup, and unregister only after success. Verify coalescing and failed-owner retry. Refs #4253.
* fix(adb): own transfer snapshots and stage screen publication
Bind transfer digests to the exact private input bytes and preserve caller APK names. Retain failed descriptors and private-root owners with typed cleanup evidence; publish captures exclusively after the cancellation cutoff. Refs #4251, #4252.
* fix(verification): report ADB cleanup failures
Always close after attempted verification and keep unexpected primary failures and cleanup details visible. Exercise the production script with controlled imports, including null and undefined throws. Refs #4260.
* fix(runner): stop owned Windows commands on cancellation
Use the retained ChildProcess handle for IPC cancellation and parent disconnection. Keep the SQLite lock until observed child close, and include native Windows regressions in the curated CI lane. Native Windows results remain pending. Refs #4258.
* fix(website): canonicalize link containment boundaries
Compare resolved targets with resolved repository and site roots. Accept directory aliases while preserving escape checks and keep fixtures within their temporary owner. Refs #4264.
* docs(testing): cover completion races and cleanup retry
Clarify validation-before-cancellation, independent startup waiter controls, producer and adapter coverage, and repeated shutdown events.
* fix(filesystem): retain file owners and completed reads after close failure
* fix(session): report retained snapshot staging in cleanup status
Fixes#4277. Include both snapshot and profile file-resource scopes in the owning status fact, preserving publication receipts and cleanup retry.
* docs(mcp): clarify recovery of raw partial observations
Document the observed SDK cancellation boundary and the open design decision in #4276 without promoting raw errors to Evidence.
* fix(kuna): own the complete installation inspection lifetime
* test(kuna): cover session cleanup of shared cache resources
* fix(hopper): isolate publisher operation resource admission
* fix(hopper): preserve launcher cleanup failure classification
* fix(adb): retain ordered cleanup and screen publication outcomes
* fix(runner): retain Windows job ownership through cleanup retries
* docs: clarify inspection admission and ordered cleanup regressions
* fix(ghidra): preserve startup cleanup and request deadlines
* fix(runner): supervise stdin errors and bootstrap native controls
* docs: require queued lifecycle controls to survive admission
* fix(cli): leave cleanup resolution with resource owners
* test(adb): verify owned install snapshots through CLI
* fix(errors): exclude resolved primary cleanup resources
* fix(adb): resolve publication cleanup after its handle closes
* fix(android): resolve JADX hash cleanup after owned close
* refactor(android): share hash failure cause options
* fix(kuna): gate commands on retained descriptor cleanup
* docs: cover cleanup admission and owner-confirmed recovery
* refactor(artifacts): bind cleanup errors to confirmed release
* fix(adb): resolve recovered cleanup at retained owners
* fix(kuna): resolve installation cleanup after owned close
* fix(kuna): gate cache reads on retained hash cleanup
* fix(setup): preserve publisher cleanup admission failures
* fix(android): resolve the reported retirement cleanup error
* test(runner): scope post-spawn fault control to POSIX
* test(adb): cover persistent snapshot owner retirement
* fix(kuna): preserve file outcomes with explicit cleanup ownership
* fix(artifacts): resolve errors through retained cleanup owners
* docs(lifecycle): carry cleanup ownership in typed outcomes
* fix(adb): bind staged screen errors to their cleanup lease
* fix(kuna): bind profile cleanup through a close capability
* fix(artifacts): retain descriptor resources in cleanup errors
* fix(pcap): bind existing errors to snapshot retirement
* fix(windows): load source owner through its file URL
* test(build): copy the command runner helper into fixtures
* fix(mcp): own shared observation providers in the transport
* fix(jadx): resolve every retained cleanup retry error
* fix(kuna): bind retry errors to every retained cleanup owner
* fix(adb): bind admission and shutdown errors to exact cleanup leases
* fix(windows): resolve command paths before native ownership
* test(publisher): assert exact descriptor recovery without release metadata
* docs(lifecycle): require every retry error to follow its owners
* fix(kuna): keep hash cleanup state stable across concurrent retries
* test(windows): exercise surviving descendants with scoped shutdown deadlines
* fix(uninstall): preserve primary read errors through cleanup failure
* test(publisher): assert cleanup Result and exact owner recovery
* test(windows): observe supervisor resources through IPC disconnect
* fix(browser): retain typed cancellation after interrupted actions
* test(publisher): assert ownership phases without retry-count coupling
* fix(lifecycle): preserve abort reasons through shared provider execution
* fix(jadx): preserve execution and late hash cancellation causes
* fix(adb): compose late cancellation with exact cleanup failures
* test(mcp): use the shared budget for session workflows
Resolve stable lexical and URL targets using shared effects, and preserve unresolved request expressions as partial facts. Carry their uncertainty through workers, artifact graphs, and the CLI. Scope partial endpoint identity to the source site.
Refs: #3451, #3534
Co-authored-by: Hemang Varshney <218273197+hemv-857@users.noreply.github.com>
Use the default home registration and personal skill roots for an empty profile override. Share marker and skill path resolution while preserving nonempty caller paths, backups and idempotence.
Refs #4262, #4270
Co-authored-by: Polly Labs <pollychen.lab@gmail.com>
Report cleanup from the owning snapshot and provider-candidate resource scopes without retrying or starting work. Keep status accurate before a client exists and through cleanup retry.
Refs #4277, #4274
Own CDP transports from admission through observed close, retain failed
owners for retry, and keep active peers separate from pending cleanup.
Preserve primary errors and completed facts through final cancellation.
Forward passive Electron CLI cancellation and dispose browser, runtime and
scenario owners from CLI and MCP shutdown.
Refs #4255, #4256, #4257
Validate completed reports before cancellation projection, retain valid
Evidence and captured command diagnostics, and convert raw cleanup partials
at their application owner. Record partial Evidence consistently across MCP
handlers. Keep page inspection separate from unfinished bundle analysis.
Refs #4261
Preserve completed digests and primary failures when descriptor close fails.
Carry the exact handle owner through provider, readiness, cache, doctor and
verifier boundaries, and retry cleanup without rehashing or retrying a raw fd.
Close candidate-owned resources even when no target client was opened.
Keep verifier workspaces when provider shutdown remains incomplete.
Refs #4266
Replace recursive getter histories with a query-owned worklist and memo. Bound
precise expansion at 512 states and widen growing receiver cycles; retain
escaped roots and constructed children rather than silently dropping suffixes.
Carry the resource limit through semantic coverage, worker transport and graph
Evidence while preserving direct writes, imports and unrelated literal facts.
The small source probe reduced 65/326 paths to one widened reference for five
and six getters. The original large Claude artifact was not rerun. Validate
receiver/alias/mutation controls and compiled CLI/MCP consumers.
Refs #3839, #3848
Co-authored-by: Yi Han <yhan606@aucklanduni.ac.nz>
Distinguish call-form require from TypeScript import-equals before resolving
inventory paths. Probe CommonJS files before indexes and honor package main
without requiring an index. Retain selected manifest directory identities and
reuse the path lookup owner for canonical ambiguity.
Validated with source/reader tests and a public CLI fixture controlled by the
pinned Node loader. Windows no-follow reader behavior remains unverified.
Refs #3895, #3896, #3973, #4017.
Co-authored-by: hhang <169027046+xu91102@users.noreply.github.com>
Co-authored-by: IssueHunter Worker <issuehunter@users.noreply.github.com>
* fix(cleanup): preserve owner recovery instructions
Keep cleanup remediation through combined errors and direct or managed one-shot analysis while retaining primary diagnostics.
Refs: #4227
* fix(hopper): recover late startup and retained cleanup
Authenticate initial and cleanup handshakes through the same identity owner. Expose startup and cleanup activity, retain health after target retirement, and expire abandoned unauthenticated listeners without timing out authenticated work.
Refs: #4227
* fix(providers): retain composite lifecycle facts across retries
Preserve observed child health with incomplete peer coverage, retry only unresolved clients, and retain all child cleanup recovery actions.
Refs: #4233
* fix(process): honor cancellation through capture cleanup
Check the request signal after cleanup and before final publication, retaining completed observations under typed cancellation.
Refs: #4005
* fix(native): preserve failed LLDB launch ownership and exit proof
Publish failed-launch process identity and observed exit separately from object validity. Retire only the exact owned process and retain uncertainty when exit cannot be established.
Refs: #4232
* fix(native): honor cancellation after trace finalization
Check cancellation after runtime-root cleanup and retain collected trace observations as partial cancellation evidence.
Refs: #4009
* fix(cli): preserve analysis results when provider cleanup fails
Reuse the existing one-shot finalizer across thirteen command families to retain completed Evidence and primary diagnostics on close failure. Cover success, denied cleanup, and combined primary/cleanup failure through the public CLI.
Refs: #3935
* docs(lifecycle): define completion invariants and regression scenarios
Document distinct ownership/readiness/exit facts, late cancellation and atomic publication boundaries, partial child cleanup, and diagnostic retention. Link representative regressions and route contributor guidance through AGENTS.md.
Refs: #4227
* fix(session): retain run identity through pending cleanup
* fix(cli): preserve original cleanup resource diagnostics
* fix(native): retain completed facts through finalization failure
* fix(providers): report retained cleanup paths at their owners
Match repeated derived Evidence against the immutable creation revision while retaining analyst updates, conflict rejection and imported history.
Refs: #3925, #4159
Co-authored-by: rudrakshkarpe <rudraksh.karpe@gmail.com>
Preserve applicable artifact processing phases and entered/unvisited status after interruption. Centralize JavaScript semantic applicability for full and incremental builders; retain native byte identity, actual JavaScript unknowns and structured-file provenance.
Fixes#3948. Part of #4027.
Validation:78 distinct focused cases across10files, full static/docs, and real Joplin timeout/default public CLI/MCP controls passed. Source pins, every attempt/outlier and compact resource/token projections are retained. No target/native provider execution or speedup claim.
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Validate the canonical programs directory before resolving its executable, preserving containment failures even when the external child is missing. Retain in-bundle directory and bundle aliases.
Co-authored-by: gongfpp <22683417+gongfpp@users.noreply.github.com>
The reference-source resolver probed only JavaScript and TypeScript
extensions, so require("./data") stayed unresolved when the tree held
data.json, which Node's CommonJS loader selects. Resolution now uses
extension slots: a requires edge also tries X.json after X.js and
before any directory index, and X/index.json after X/index.js,
including a package main. ESM and TypeScript imports still need an
explicit .json extension.
Fixes#3915
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Fixes#3933. Part of #4027.
Normalize exact literals and configuration defaults through the shared primitive owner. Preserve tagged limits through member/destructuring projection and record encountered bounds in per-analysis state independently of later selected values. Remove the retained-value rescan and duplicate default reader. Preserve source Evidence, bounded/null values, aggregate wire capacity and complete endpoint lookup identities for query/trace/comparison.
Validated 66 focused and 932 semantic tests on the restored identical runtime; final public selection 7/7 adds an augmented large-endpoint acceptance (67 distinct focused cases across invocations). Full static/docs and fresh real Obsidian controls passed. Compact measurements and rejected attempts remain recorded.
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
* fix: select caller paths through symlinks and .. as the filesystem does
CLI adapters, binary target resolution, the reverse-engineering service
and the objdump and Rizin command builders made caller-selected paths
absolute with path.resolve, which collapses `link/..` lexically. On
POSIX the filesystem follows `link` first, so these commands inspected,
hashed or launched a different file and returned internally consistent
Evidence for it.
absoluteCallerPath now owns that step: on POSIX it prefixes a relative
path with the working directory and keeps an absolute path as spelled;
on Windows, where `..` resolves lexically, it keeps win32.resolve.
Fixes#3864Fixes#3911Fixes#3912
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix: keep firmware, WASM list and output-root paths on the selected file
Review follow-up. The CLI already passed firmware and WASM paths through
absoluteCallerPath, but snapshotFirmware and SafeOutputTree.create
re-resolved them lexically, and the WASM glue and candidate lists still
used resolve, so those inputs could still select a sibling file or
create output beside the intended directory.
absoluteCallerPath now also drops `.` segments and repeated or trailing
separators on POSIX, which never change the named file, so selected
paths such as `./module.wasm` keep matching their glue references
exactly. Every `..` is still left for the filesystem.
SafeOutputTree keeps host path syntax; its platform argument selects only
the Windows name policy.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix: keep directory requirements and relative cwd in caller paths
Review follow-up. absoluteCallerPath stripped a trailing `/` or `/.`, so
`file/` selected the regular file instead of failing with ENOTDIR; it
now keeps one trailing separator. A relative cwd option was appended to
the root; it is now made absolute without collapsing `..`. WASM glue
matching resolved local literals lexically, so a module selected through
`link/..` matched only by basename; the adapter now compares both sides
through absoluteCallerPath and still reports each candidate as given.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
open_binary read snapshot_path before it entered the session's lifecycle
order, so a current_document or close_binary dispatched after it could
run first: the read returned Evidence for the previous target and the
close left the snapshot target open. The session now loads the snapshot
inside the open's own turn.
Co-authored-by: Claude Sonnet 5.5 <noreply@anthropic.com>
Add caller-supplied Kuna readiness, scoped doctor support and a verified whole-program export cache. Index function byte ranges without introducing analysis-tool responses, and retain unresolved process ownership through cleanup failures. Separate retryable file cleanup from unproven process cleanup.
Verified real Kuna 1.833 on Debian 12 x86-64 with coreutils, SQLite and zlib; 5,207 exported function spans, cold/warm performance, raw-export parity and lifecycle failures. Refs #1957.
Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: N0zoM1z0 <161784452+N0zoM1z0@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
* fix(reference): select a package main before its directory index
import-reference-source resolved a relative directory import such as
require("./dep") from path candidates alone, so it reported dep/index.js
as the internal, parsed dependency even when dep/package.json declared
"main": "actual.js". Node loads actual.js.
parseReferenceSourceEntries now reads each inventoried package.json once.
When an internal specifier resolves through a directory index, a
non-empty string main is loaded first, as a file and then as a directory
index, as Node does. A main whose target is absent falls back to the
index, matching Node's legacy fallback. An unreadable or invalid
manifest leaves the relationship unresolved instead of asserting the
index.
Fixes#3383
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix(reference): resolve package main the way path.resolve does
A trailing separator in main ("lib/") kept directory intent, so the
declared entry selected lib/index.js where Node loads lib.js. An absolute
main was joined under the package directory instead of leaving the
imported root. Strip trailing separators after joining, and report an
absolute main as unresolved. Both cases join the Node-oracle CLI test.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Replace fixed Linux Hopper release pins with current vendor feed metadata,
complete detached-PGP package verification under the stable publisher primary
key, and authenticated package evidence for offline admission. Share parsed
publisher facts across approved setup, doctor and the pre-execution guard.
Preserve existing ownership, cancellation, private-display and cleanup rules.
Fixes#3577
Normalize empty XDG settings, preserve backups during approved cache repair,
and retain publisher cleanup through cancellation and shutdown. Exercise cold
offline verification without reusing process-local proof state. Serialize
approved cache publication across processes, restore old evidence on failure,
and share the existing lease owner from process without changing its identities.
Validation: 438 focused tests (six platform-related skips), full static/documentation checks, real Ubuntu
24.04 official Hopper 6.6.0 setup/CLI/MCP, offline ordinary-user admission,
launcher mutation rejection, and cold/warm verification measurements. Official
RPM metadata mismatch is tracked separately in #3578 and fails closed.
BREAKING CHANGE: Older Linux Hopper builds admitted by the fixed allowlist
now require retained publisher-signed package evidence or an approved update
to the current public demo. Update explicit HOPPER_LAUNCHER_PATH values when
migrating; the live feed exposes only its current release.
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
* fix(javascript): keep empty URL path segments significant
ESM imports and HTML script references were joined with POSIX path
rules, which collapse '//' before applying '..'. URL resolution removes
the empty segment instead, so './assets//../app.js' names assets/app.js,
not app.js, and the graph linked the importer and renderer to the wrong
file. URL references refused every '//' even when dot segments cancel it.
Resolve ESM, HTML (including document base) and URL references through
one URL dot-segment helper. A remaining empty segment stays unavailable,
references above the artifact root are still rejected, and CommonJS keeps
filesystem path semantics.
Fixes#3307
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix(javascript): resolve HTML base and reference as one URL path
The base href was turned into a canonical path before the script
reference was applied. A base empty segment that the reference's '..'
would remove was rejected early, and an above-root '..' from the base
became a removable segment that the reference's '..' could cancel.
Keep one URL path state through base and reference resolution, with
above-root escapes held apart from removable segments, and reject empty
segments only in the final path. Remove the superseded htmlBaseDirectory.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
resolveInternalSpecifier offered posix.join(dir, "index") as the
second candidate, ahead of every extension. With both dep.js and an
extensionless dep/index present, require("./dep") therefore resolved to
dep/index, a file that neither Node nor TypeScript ever selects.
Directory candidates now carry an extension. File and index ordering is
otherwise unchanged, so Node-validated cases such as dep/index.js
winning over dep.cjs keep their meaning.
Fixes#3381
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Static analysis rebuilt the full lexical definitions index three times per
file (open receivers, RPC client roots, binding lookup) and the Electron
wrapper pass checked each substituted IPC registration against every prior
finding with JSON.stringify, which is quadratic in registrations.
Classify open receivers and RPC client roots in one traversal over a single
definitions-only index, then extend that same state with ambient writes for
binding lookup. Index IPC findings by side, operation, channel and location
so duplicate checks only consult same-endpoint candidates.
Static facts are byte-identical on the measured corpora.
Refs #3670
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
build_reconstruction_obligation_ledger accepted a manifest original case or
fixture whose Evidence ID was absent from the bundle whenever another entry
of the same case kind was valid. The obligation was reported verified, the
ledger ready, and the dangling ID appeared in evidence_links with no
diagnostic, although the documented contract requires every referenced
Evidence ID to exist in the bundle.
Report each absent original-case or fixture reference as missing-original-case
or missing-case, naming the ID. Any such diagnostic withholds verification and
readiness.
Fixes#3363
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Two capture-process records of the same executable and scenario generate
the same obligation ID. addCandidate added their definition counts, so the
ledger reported duplicate-definition, a closure blocker meant for competing
definitions, merely because the claim was observed twice. The merge also
kept only the first record's unavailable_authority and
required_next_evidence.
Generated IDs digest their derivation key, so merging two generated
candidates keeps one definition. A reviewed definition that reuses an ID is
still a duplicate. The merge now unions unavailable_authority and
required_next_evidence from every observation.
Fixes#3375
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
BREAKING CHANGE: Evidence and analysis snapshots require explicit nullable relationship coverage and include it in their identity commitments. Historical records without the field are rejected; saved files are not migrated.
Support case-insensitive environment value lookup in ClientRegistrationIdentity while preserving JavaScript property order precedence with findLast(). Add unit regression coverage for ambient uppercase npm variables on Windows. Isolate USERPROFILE in cliSetup tests so child processes do not touch the host profile directory. Harden JSON decision extraction in runJourney against ConPTY trailing ANSI escape codes. Deterministically sequence multiselect prompt navigation before confirmation. Filter ambient runner variables case-insensitively before launching interactive setup completion tests.
Arjun