* feat: add FreeBuff agent support for REA setup
Register FreeBuff as a supported setup client using the shared user
agents directory (~/.agents/mcp.json with mcpServers, skills in
~/.agents/skills), which matches what FreeBuff Desktop loads. Adds the
client definition, boundary tests, supported-agent docs, and the skill
reference client list.
* fix(freebuff): detect FreeBuff from its profile directory, not shared .agents
The ~/.agents marker made FreeBuff appear installed for any home where
REA had installed shared skills (the default skill destination, also
Gemini CLI's), producing false doctor failures. Detect FreeBuff from
its own fixed profile directory ~/.config/freebuff-desktop instead,
and add a regression test covering a home with only the shared agents
skill directory.
* fix(setup): require product evidence for FreeBuff discovery
Address review findings at their producing boundaries and preserve directly affected consumers. Source inspection and git diff --check completed. Tests and automated checks were not run at the user’s explicit request.
* fix(uninstall): retain unverified shared client configuration
* fix(clients): preserve scoped removal evidence
* fix(doctor): omit undefined selectedClientIds under exactOptionalPropertyTypes
Passing selectedClientIds explicitly as undefined fails typecheck on this
branch (TS2379), which blocks the focused test workflow before any test
can run. Spread the option only when defined.
* fix(update): separate ownership evidence from product applicability
rea update's maintenance scope inspected only product applicability
evidence, so when a FreeBuff profile was absent but REA already owned a
version-pinned row in the shared ~/.agents/mcp.json, the plan omitted
freebuff and left the integration stale. FreeBuff now declares its
registration storage as shared, which proves ownership of an owned row
but never product applicability, and maintenance requests ownership
evidence through that declaration instead of reinterpreting the shared
paths. Doctor and setup keep readiness evidence, foreign rows stay out
of maintenance, and the Doctor exactOptionalPropertyTypes fix makes the
focused test workflow runnable.
* test(dotnet): split oversized operand extent diagnostics describe
The describe callback reached 162 lines (max 150), failing
max-lines-per-function and blocking the pre-push check for this branch.
Move the single-case extent scenarios into their own describe; no test
content or order changes.
* fix(update): preserve ZCode's disabled shared registration during maintenance
The shared user agents file doubles as ZCode's fallback, where
`enable: false` disables the registration. Ownership-based maintenance
read that row as a FreeBuff registration, whose format does not
recognize the flag, so the row was selected and the emitted setup
command rewrote it, dropping the flag and silently re-enabling a
registration the user had disabled.
registrationActivation now honors `enable: false` for any client whose
registration storage is shared, because the activation fact binds every
reader of that storage. Maintenance leaves such rows out; doctor
reports them as stale, matching ZCode's own treatment.
* fix(doctor): let explicit client selection authorize the config read
When an ACL or an inaccessible shared parent made every access probe
fail, a client selected by name was omitted before the configuration
read could return its unreadable-config detail, so doctor reported it
as not detected with installation remediation: an unresolved selected
path collapsed to absence.
An explicit selection now authorizes the read outright and the probes
serve automatic discovery only. A selected client with an unreadable
config reports invalid with the read failure; one with no config
reports missing; automatic discovery still probes before inspecting.
* fix(uninstall): share shared-storage checks between ZCode and FreeBuff
clients() queued ~/.agents/mcp.json twice: once as zcode_fallback and once
as freebuff. ZCode has no discoveryPaths, so its strict read still blocked
uninstall on malformed shared text, despite FreeBuff's new retain-and-continue
behavior. For a valid owned entry, ZCode removed it first, so FreeBuff reported
skipped rather than removed.
Make the shared file's checks and removal one shared decision:
- Add zcodeDiscoveryPaths to ZCode so it has its own applicability evidence.
- Gate zcode_fallback push on applicable, not just zcodeFallbackPath presence.
- Report shared storage ownership as one decision for both clients:
FreeBuff and ZCode now use clientOwnershipEvidencePaths together, so a
recognizable REA-owned row proves ownership once for the shared storage, and
both clients report the same result consistently.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix(uninstall): merge duplicated host and prove shared ownership from owned rows
Uninstall.ts declared systemUninstallHost twice, preventing module load,
with the exported copy returning only clients and the second copy missing
clientWriteBlocker. Merge into one exported host carrying both blockers.
hasOwnershipEvidence used access() existence, so an unrelated malformed
~/.agents/mcp.json established ownership and blocked every removal.
Ownership now requires a readable, recognizable REA-owned row via the
injected filesystem, so unrelated shared data stays retained.
Also cover ZCode discoveryPaths in its path test.
* fix(uninstall): keep denied product-local configurations fail-closed
Unproven product applicability marked every configuration path of that client unverified, so a denied ZCode profile turned an unreadable product-local config into a retained item: uninstall continued and could report complete with REA still registered. The retain-and-continue exception now applies only to storage REA does not own, classified once by clientSharedRegistrationPaths (shared configuration plus another product's same-scope fallback).
Covers the Greptile P1 on Uninstall.ts. Validation: the new test fails on the pre-fix Uninstall and passes after it; freebuff/zcode/updateMaintenance/bom/dsh suites green; clientLifecycle, clientRegistrationStatus and claudeDesktop keep the same 8 host failures as the pre-merge baseline (symlink EPERM, stale-vs-aligned on Windows).
* fix(update): retain FreeBuff when ZCode reads the shared fallback
Maintenance deduplicated clients on the path each inspection read, so ZCode's fallback view of ~/.agents/mcp.json marked that file "covered" and dropped FreeBuff from the scope. ZCode setup writes ~/.zcode/cli/config.json and deliberately leaves the fallback untouched (docs/client-configuration.md), so the emitted command refreshed only ZCode while the shared row both products load stayed pinned to the old package version. Each setup action rewrites only its own configuration path and no other action rewrites the shared row, so every selected client keeps its own maintenance action; the read-path covered/deduped filter is removed.
Covers the Codex P2 on UpdateMaintenance.ts:104. Validation: the new regression fails on e2fdec384 with {clients:["zcode"]} and passes with {clients:["freebuff","zcode"]}; updateMaintenance 31/31, setupClientConfigCleanupOwnership, cliUpdateAlias, updateOutput, cliStartupImports green; tsc --noEmit, oxlint (0 errors) and oxfmt --check clean; clientRegistrationStatus keeps the same 4 symlink/stale-vs-aligned failures this Windows host has on base e2fdec384 (verified by stashing the change).
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <noreply@codebuff.com>
* fix(uninstall): preserve completed reads as shared ownership evidence
hasOwnershipEvidence caught every read failure and kept scanning, so a handle-close failure after a successful read — a RegularFileCleanupFailure whose completed outcome still contains the exact shared-file text — was discarded as "no proof". FreeBuff's applicability-unverified storage therefore never got its ownership fact, and once the retained handle blocked later reads, readClientConfiguration downgraded them to retained: inspection passed, removals soft-failed, and runUninstall(true) could purge REA data while the active shared registration remained. The catch now parses the completed outcome for the ownership text while missing or unreadable storage and malformed data keep their proves-nothing semantics, so ownership holds and every later read failure stays blocking.
Covers the Codex P2 on Uninstall.ts:252. Validation: the new regression fails on 4dbfdf1a9 (freebuff reports no blocking failure while the poisoned-scope error lands on claude_code) and passes after; setupClientConfigCleanupOwnership 25/25; the other 21 Uninstall-consumer suites are byte-identical to base 4dbfdf1a9 (61 pre-existing Windows-host failures: symlink EPERM, stale-vs-aligned); tsc --noEmit, oxlint (0 errors, same 6 warnings) and oxfmt --check clean.
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <noreply@codebuff.com>
* fix(uninstall): keep owned-row proof through removal refusals
hasOwnershipEvidence treated any clientRegistrationRemoval refusal as no ownership: an effective REA-owned rea member shadowed by an earlier foreign duplicate (shadowed_unowned_member), or an owned native row beside a foreign V1 fallback (foreign_legacy_fallback), discarded the already-parsed positive row fact. With FreeBuff unverified and close failures recurring on the preflight/removal rereads, those failures were then downgraded to retained, so runUninstall(true) removed the skill and purged REA data while the active owned row remained. The refusal now carries the owned rows that motivated it — the refusal only refuses the edit — and hasOwnershipEvidence evaluates that fact on both paths; preflight and removal keep refusing the unsafe edit exactly as before.
Covers the Codex P2 on Uninstall.ts:269. Validation: the new regression fails on 225cb214a (freebuff reports no blocking failure while the poisoned-scope error lands on claude_code) and passes after; setupClientConfigCleanupOwnership 26/26; the 21 Uninstall-consumer suites are byte-identical to the recorded 225cb214a baseline (61 pre-existing Windows-host failures: symlink EPERM, stale-vs-aligned); tsc --noEmit, oxlint (0 errors, same 6 warnings) and oxfmt --check clean.
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <noreply@codebuff.com>
* fix(uninstall): keep unresolved discovery probes from softening shared failures
The discovery probe swallowed every stat failure, so a FreeBuff profile denied with EACCES/EIO was indistinguishable from an absent profile: shared storage was marked applicability-unverified and, when ~/.agents/mcp.json also remained unreadable, the ownership and removal reads softened to retained. runUninstall(true) then removed the skill and purged REA data while an installed FreeBuff could still hold an active registration — the regression even reports complete. Absence (ENOENT) is now the only state that leaves shared paths unverified; any other probe failure leaves applicability unresolved, and shared-config failures stay blocking.
Covers the Codex P2 on Uninstall.ts:318. Validation: the new regression fails on 7572a7082 with status complete and purged data and passes after; freebuffClientConfiguration 13/13; the Uninstall-consumer batches are byte-identical to the recorded baselines (61 pre-existing Windows-host failures: symlink EPERM, stale-vs-aligned); tsc --noEmit, oxlint (0 errors, same warning rules) and oxfmt --check clean.
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <noreply@codebuff.com>
* fix(uninstall): retain completed configuration reads as removal evidence
A close failure after a completed read discarded the text that read
produced, so an owned registration row the text proves softened to
retained. The completed text now drives removal, keeping shared-config
failures blocking when ownership evidence exists.
Co-Authored-By: Anthropic <noreply@anthropic.com>
* fix(uninstall): stop removal when a cleanup retry leaves a handle unreleased
A completed reread whose handle the cleanup retry cannot release now fails
blockingly instead of serving the text: with no owned row, the soft path
let removeAll purge managed data before close() reported the incomplete
cleanup. The completed text is served only after the retry releases the
handle; an unreleased handle is REA's own failure, never applicability
uncertainty, so it bypasses the retained softening.
Co-Authored-By: Anthropic <noreply@anthropic.com>
* fix(uninstall): keep the ZCode fallback when its profile probe is unresolved
A denied or failed profile probe leaves ZCode's applicability unresolved,
never absent, but the fallback branch dropped the shared row on
applicability alone: with the native config and FreeBuff's profile both
absent, an installed ZCode kept its uninspected registration while
uninstall purged skill and data. Unresolved probes now keep the fallback
in scope with the same fail-closed treatment as other unresolved shared
paths; definitive absence still keeps ZCode out of another product's
primary storage.
Co-Authored-By: Anthropic <noreply@anthropic.com>
* fix(setup): preserve a shared row's enable:false during FreeBuff repair
The shared agents file doubles as ZCode's fallback, so its `enable: false`
binds every reader: doctor now reports the disabled row as stale for
FreeBuff, but following that remediation rebuilt the generic JSON entry
without the flag and silently re-enabled a registration ZCode disabled.
Repairs of shared storage now carry the activation fact forward, while a
client's own native storage keeps its established single-reader repair
contract; the denied-profile uninstall regression also pins the
fallback's new fail-closed inspection beside the denied read.
Co-Authored-By: Anthropic <noreply@anthropic.com>
* test(uninstall): retarget the completed-reread regression to a released retry
The concurrent-writer regression held the reread handle open forever,
which the fail-closed path now serves: it duplicated the unreleased-handle
regression while documenting the opposite contract. The fixture's close
spy gains a failure limit so the cleanup retry releases the handle, and
the test again proves the completed text drives removal of the
concurrently added owned row, with purge verified against the cache
layout purge actually removes.
Co-Authored-By: Anthropic <noreply@anthropic.com>
* fix(doctor): report a preserved shared disable as a manual conflict
Preserving a shared row's enable:false left doctor recommending a setup
run that registrationCurrent correctly treats as already current, so the
scoped doctor returned needs_human forever. The shared-enable
interpretation now has one owner, sharedEnableFlagBinds, used by both
the activation rule and the remediation: a row disabled through the
shared flag reports the manual conflict and states that rea setup will
not change it, instead of an endlessly ineffective repair.
Co-Authored-By: Anthropic <noreply@anthropic.com>
* fix(doctor): keep a native ZCode disable on the setup repair path
The manual-conflict remediation matched a native zcode row through
sharedEnableFlagBinds, but setup drops enable:false on single-reader
storage, so a native disabled registration was told setup would not
change it. The remediation now reads setup's own writer rule,
exported as setupPreservesDisabledActivation: shared storage and the
zcode fallback view keep the manual-conflict message, while a native
row keeps the working rea setup instruction. Regressions pin both
remediations.
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <noreply@codebuff.com>
* revert: drop the unrelated managed-CIL describe split
The split does not belong to FreeBuff client support and only widens this
PR's diff.
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <noreply@codebuff.com>
* fix(uninstall): remove the shared agent registration once for both clients
ZCode's ~/.agents/mcp.json fallback and FreeBuff's own configuration queued the
same physical file twice, so ZCode removed the row and FreeBuff then reported
it absent, losing the outcome for the client that owns the file.
Resolve every configuration path to one owner -- the client whose
configuration it is -- and project that single inspection and removal to each
client that loads it. A fallback reader still contributes its discovery probe,
so an installed or unresolved reader keeps the shared file fail-closed.
Discovery also accepted a dangling ~/.config/freebuff-desktop link, which setup
and doctor reject because they follow the target, so an unrelated malformed
shared file blocked every other removal. Resolve the link before treating the
profile as installation evidence, keeping lstat for removal safety.
Also date the FreeBuff release wording against the published 6.7.0 package.
* fix(uninstall): keep a row per client when two clients own one file
OPENCODE_CONFIG can point OpenCode at FreeBuff's configuration file, where
OpenCode writes `mcp.rea` and FreeBuff writes `mcpServers.rea`. Grouping by
filename gave that path a single owner, so uninstall removed only OpenCode's
row, reported that removal for FreeBuff, and could purge managed data with
FreeBuff's registration still active.
Share the decision only through a fallback view of another client's row: every
client that declares the path as its own configuration keeps its own
inspection and removal, and the fallback reader reports each of them.
* fix(clients): preserve discovery and fallback registration identity
Follow product discovery link targets without losing configuration entry
presence or explicitly selected inspections. Associate fallback readers with
the format owner's registration table and project outcomes by owner and path,
so OpenCode removal cannot be reported as a ZCode fallback removal.
All three new boundary regressions fail against the previous source and pass
with the fixes. Validation: check:fast; 217 focused tests passed; the two
changed test files were rerun with 50 passing tests. No installed FreeBuff
client was launched.
---------
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: Codebuff <noreply@codebuff.com>
Carry the command identity already parsed during registration inspection into maintenance selection. Keep activation, validity and public status output separate.
Validation: fresh build/catalog and full static checks; registration status, update maintenance and setup cleanup ownership suites passed (90 tests).
* feat(ghidra): bound one procedure's decompile without closing the session
Fixes#5340
* fix(ghidra): report decompile limit as a request timeout
Keeps BinarySession from marking every Ghidra operation unavailable after one procedure's decompile reaches the limit, and names the MCP tool-call deadline in the remediation.
* fix(ghidra): budget the decompile limit and report cancellation-closed sessions
Adds REA_GHIDRA_DECOMPILE_TIMEOUT_SECONDS to the derived Codex/Kimi tool deadline and forwards it through setup. Marks a remote failure that settles after caller cancellation so the timeout projection no longer promises session reuse.
* fix(ghidra): align deadline bounds and cancellation outcomes
* refactor(ghidra): shorten deadline recovery guidance
* fix(mcp): clarify the scope of inferred decompile deadlines
* test(ghidra): verify deadline workflows and document measured costs
Separate failure and registration cases by their distinct contracts.
Record actual Linux Ghidra, CLI and MCP evidence with measured context,
elapsed time, CPU and memory, and explicit remaining coverage limits.
* docs(ghidra): pin integration and distinguish baseline format failures
* fix(ghidra): own failure lifecycle wording in the provider
* test(ghidra): budget timeout fixture generation before allocation
* fix(ghidra): align capability and traversal deadline guidance
* style(config): align deadline guidance formatting
* docs(ghidra): record capability and traversal verification
---------
Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
* fix(doctor): read each client's own activation key
Doctor treated both `disabled: true` and `enabled: false` as a disabled
registration for every client except Grok. The installed clients each
read only one of them: Codex and Kimi Code honor `enabled` and still
load a server marked `disabled`, while Devin honors `disabled` and
still loads a server marked `enabled: false`. Doctor reported those
loaded registrations as stale, so `rea doctor --client codex` failed
with config_drift and setup offered to "repair" a working entry.
Skip the key each of these clients ignores. Other clients keep the
existing rule.
* fix(tests): resolve the Devin config root per platform in activation cases
The client activation cases wrote Devin's mcp_config.json under the
XDG root on every platform, but devinDirectory resolves APPDATA (or
~/AppData/Roaming) on Windows. Follow the client's per-platform root
so the cases exercise the file doctor actually reads there.
Read bounded regular registrations asynchronously with retained descriptor cleanup. Carry the selected parsed configuration through provider factories and restoration, preserve exact cancellation reasons, and share workspace-parent resolution with doctor checks.
Closes#5561Closes#5559Closes#5604
Codex and Grok client TOML was parsed with smol-toml's default reader,
which rejects any integer beyond JavaScript's safe Number range. Valid
TOML 1.0 Int64 values such as `max_bytes = 9223372036854775807` made
setup, doctor and uninstall treat the whole file as malformed.
The client TOML owner now parses with `integersAsBigInt: "asNeeded"`,
keeping safe integers as numbers and larger ones exact as bigint, and
rejects values outside signed Int64 before any write. All TOML parses in
the document owner (document read, inline string decoding and the
preserving-edit check) use that reader. The inline-table writer emits
bigint values, and setup and doctor accept a positive bigint
`startup_timeout_sec`/`tool_timeout_sec` instead of replacing or
rejecting it.
Fixes#4917
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Preserve original RegularFileCleanupFailure capabilities when registration
inspection or maintenance planning has no caller-supplied resource scope.
Keep scoped diagnostics with the scope that already retained the descriptor.
Cover configuration and policy sources, completed and malformed-UTF8 reads,
all four exported reader/planner boundaries, exact descriptor retry after
pathname replacement, no subsequent execution, and scoped cleanup retry.
Validation: 79 tests across four focused files; the historical baseline fails
all 16 new ownership-transfer controls with eight existing/scoped controls
passing. check:fast, format:check, test discovery and six isolated completed
public doctor comparisons passed. Scoped source review found no blocker.
Real temporary descriptors and injected close rejection on macOS arm64 /
Node24.18.0; no native Windows/Linux close faults or provider verification.
Fixes#4910
Use entry metadata to discover registration evidence independently of target
readability. Preserve failed metadata inspection as a named invalid diagnostic
instead of treating all lookup failures as absence. Remove the duplicate
boolean existence wrapper; configuration parsing remains the read owner.
Cover native permission-denied targets and metadata, dangling configuration
entries, maintenance exclusion, and public doctor output without mutation.
Validation: 73 focused tests across four files, check:fast, format:check,
and six isolated completed public doctor cost comparisons passed on macOS
arm64 / Node24.18.0. Native Windows/Linux permissions were not verified;
POSIX permission controls skip unsupported hosts and root.
Fixes#4905
Use one registration classifier for doctor, maintenance and uninstall.
Preserve unknown identity when launcher resolution fails, and compare native
paths without collapsing symlink traversal. Keep Node argv script selection
separate; ambiguous direct-launch interpretations cannot authorize removal.
Remove the superseded boolean ownership parser.
Validation: 183 focused tests passed, 2 Windows cases skipped; check:fast
and docs:check passed. Five public regressions fail on the baseline, including
foreign registration removal in an isolated fixture. Source review and authored
Node shebang controls completed on macOS with Node 24.18.0. Native Windows,
Linux and real mise upgrades remain unverified.
Closes#4895Closes#4896
Capture the current entrypoint once without inventing a path. Preserve unknown registration ownership through setup and doctor, refuse unsafe registration plans, and retain exact pinned-launcher readiness checks. Hash the same full or compact schema projection advertised by each MCP server and use that identity in doctor comparisons.
BREAKING CHANGE: server.command_path may be null when the invocation path is unavailable. Registration and setup statuses, and doctor classifications, may report unknown.
Reviewed-PR: #3230, #3015
Co-authored-by: qorvr <330186599+qorvr@users.noreply.github.com>
Co-authored-by: Hemang Varshney <218273197+hemv-857@users.noreply.github.com>
Resolve native-versus-fallback precedence once at the parsed configuration owner. Status and maintenance consume the selected dialect and path, including invalid and disabled fallback registrations.
Validation: 28 ZCode boundary and 26 maintenance tests pass. No configuration writes introduced.
Based on #3123.
Co-authored-by: IvenKooLab <276572622@qq.com>
* feat(setup): add Kimi Code client support
Registers rea in ~/.kimi-code/mcp.json (or $KIMI_CODE_HOME/mcp.json), preserving unrelated settings with a .rea.backup; registration is command-based stdio with no type field, startupTimeoutMs 30000 and toolTimeoutMs 120000 from MCP_STARTUP_POLICY.
Strict JSON parsing: empty or whitespace-only files initialize; malformed JSON is rejected untouched with no backup; explicit transport other than stdio reports invalid.
Bundled skill uses the shared ~/.agents/skills destination that Kimi Code discovers, installed and verified through the shared-skill flow.
Validated by 19 Kimi-specific tests, 260 adjacent-client regressions passing, check:fast and docs:check, and real-client verification on Kimi Code 0.40.1 (173 tools discovered, real mcp__rea__analyze_javascript_application call succeeded).
* fix(setup): preserve Kimi tool filters and strict JSON coverage
---------
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
* fix(setup): resolve the configuration MSIX Claude Desktop reads
On Windows, setup, doctor and uninstall always used
%APPDATA%\Claude\claude_desktop_config.json. The MSIX build of Claude
Desktop (package family Claude_pzs8sxrjxfjjc) virtualizes AppData writes
and reads its package-private copy under
%LOCALAPPDATA%\Packages\<family>\LocalCache\Roaming\Claude once it exists.
Setup from an ordinary process therefore wrote a file the app never reads,
and doctor reported that file healthy.
Resolve the Claude Desktop location once, in supportedClients(): the
private copy when it exists, else the AppData file the package still
reads, else a new private copy. An unrecognized Claude_* publisher or
unreadable package storage is reported instead of falling back to AppData.
Compare one of the package's private files with its AppData path through
realpath.native to learn whether the running package started this
process. From that redirected view, or when no file can be compared,
setup and uninstall refuse to change Claude Desktop's configuration,
because the running app rewrites it from memory. From a redirected view
they also refuse writes under %APPDATA% and %LOCALAPPDATA% for other
clients and skills, which would land in the package's private storage.
Setup refuses to register a launcher stored in any MSIX package's
private storage, discloses which file the package reads, and tells the
user to quit Claude Desktop fully on every platform. Configuration fails
with target_changed if the package switched to its private copy after
the plan was shown. Uninstall removes REA from both files.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* docs(setup): record the verified MSIX Claude Desktop registration
On the Windows 11 host with the MSIX build 2.31226.1.0, setup from an
ordinary terminal with the app quit wrote the package-private copy. After
the app restarted, the entry persisted, doctor reported it aligned, and
Claude Desktop's MCP log showed REA starting and answering tools/list.
Uninstall against the real app remains unverified.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* style(setup): format MSIX review corrections
* fix(setup): carry the admitted legacy path through uninstall removal
clientRegistrationRemoval returned a removeLegacy boolean, and removeClient
recomputed the legacy path separately, so TypeScript could not prove the
path existed when removeLegacy was true and `tsc --noEmit` failed in
Uninstall.ts. The decision now returns the admitted legacy path itself;
preflight and removal consume that one value.
The alias regression matched new-destination children with a "/"
separator while building paths with path.join, so it failed on Windows.
It now uses path.sep.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* test(setup): split MSIX Claude Desktop lifecycle cases under the function length limit
The uninstall cases pushed the registration lifecycle describe past the 150-line lint limit. Group them separately, with the AppData registration case kept among the registration cases.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
* feat(clients): register ZCode during setup
- SupportedClients: zcode definition (~/.zcode/cli/config.json, format
zcode, personal skills at ~/.zcode/skills)
- ClientConfigurationDocument: zcode dialect reads/writes the nested
mcp.servers table; withClientServers now tolerates a missing outer
table for fresh documents
- docs: add ZCode to the supported-clients table with configuration notes
- tests: zcodeClientConfiguration.test.ts (path resolution, nested
upsert, fresh/empty configs, uninstall)
Verified: tsc --noEmit clean; vitest run
tests/boundary/filesystem/zcodeClientConfiguration.test.ts 6/6.
* fix(clients): preserve ZCode fallback servers and honor enable flag
Review follow-up (#1564), two integration gaps:
- ZCode reads the user-scope ~/.agents/mcp.json fallback only while the
native .zcode config defines no servers at all, with no merging. Setup
now copies the fallback's mcpServers entries into the native table when
writing the first native server, so registrations that only live in
the fallback keep loading; the fallback file is left untouched. A
malformed fallback fails setup closed (configure and preflight)
instead of being silently suppressed.
- ZCode disables a server with "enable": false on its entry, which the
generic status parsing (disabled/enabled) did not recognize: doctor
reported such a registration as aligned although ZCode never starts
it. The ZCode dialect now treats enable: false as disabled (state
stale) and setup rewrites the entry on rerun.
Docs describe both behaviors; the bundled REA skill's supported client
list includes zcode.
Verified: tsc --noEmit clean; vitest run
tests/boundary/filesystem/zcodeClientConfiguration.test.ts 10/10;
npm run check:fast green; npm run verify:test-discovery 733 files.
* fix(clients): reject non-regular ZCode fallback files before reading
Resolve the fallback through the client-config transaction path and the
regular-file admission before parsing it, so a FIFO or other non-regular
file at ~/.agents/mcp.json fails setup closed instead of blocking the
read indefinitely. Directory and FIFO fallback cases are covered in
tests, and the preflight remediation names unreadable fallbacks too.
---------
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Separate stable registration ownership from setup editability. Keep group-owned rows removable, retain expression-backed structures without edits, and reject malformed literal patches before setup writes. Preserve foreign rows and backups during uninstall.
Correct stale alias fixtures to use valid Harness patch rows and remove redundant alias coverage. Validation: 78 configuration boundary tests, 6 public setup/uninstall CLI tests, full static checks, and docs checks passed. Harness behavior was verified from pinned source; no real Harness runtime verification is claimed.
* feat(setup): register DeepSeek Harness through setup, doctor and uninstall
DeepSeek Harness registers MCP clients through a Cordis YAML patch
sequence in the home patch rather than a server table, so setup could
not configure it and users had to append the documented entry by hand.
Add a dsh client: the home patch $DSH_HOME/cordis.patch.yml
(~/.dsh/cordis.patch.yml when unset) is parsed as a patch list, the REA
entry owns the stable rea-mcp id, and setup appends or replaces exactly
that entry while preserving unrelated patches and comments in place.
Doctor reports the registration through the same entry, and uninstall
removes it, dropping insert operations it emptied. Skill destinations
follow ~/.agents/skills ($DSH_AGENTS_HOME/skills when configured), the
home the rest of the client machinery already uses.
Fixes#1839
* fix(setup): carry environment and identity validation into DSH registrations
Address review: the DSH entry discarded discovered provider overrides;
config.env is now emitted and retained like the other dialects. An entry
carrying the rea-mcp id under a wrong or missing package name, or
duplicated entries, reads back as absent so setup rewrites exactly one
canonical entry instead of reporting unchanged. Doctor now requires
serverName rea and stdio transport before calling a DSH registration
aligned, and the Harness skill identifier in the docs matches the
installed reverse-engineer-anything skill.
* fix(setup): apply Cordis patch order and collapse DSH registrations
Address review: a later direct { id, config } operation replaces the
row's config under the native patch DSL, so the registration view now
applies patches in order instead of only reading insert operations;
doctor reports the effective command rather than the inserted one.
Setup rewrites exactly one canonical entry: duplicate id-matching rows
collapse to the first, direct patches to the entry are dropped from the
document and from the edited YAML, and uninstall removes them with the
entry. The client-location test fixture now clears DSH_HOME and
DSH_AGENTS_HOME so a developer environment cannot point the suite at
real Harness homes.
* fix(setup): repair direct-only registrations and preserve Cordis entry state
Serialize now edits the first insertion carrying rea-mcp in place, so a
grouped entry keeps its scope, neighbors, and comments instead of moving
to a fresh root-level insertion, and later carrying insertions and direct
patches collapse away. Entry-level disabled state projects into the
registration the doctor and setup compare, so a disabled row reads as
stale and the repair re-enables it. A direct-only registration no longer
suppresses the canonical insert append, and an update retains the
registration environment. Duplicate entries collapse across operations,
not only within one.
* fix(setup): preserve Harness row state through identity and refresh repairs
A wrong-package row still reads back as a server record carrying its
environment and caller fields, projected with a package marker the
alignment path treats as stale, instead of vanishing and dropping
config.env from the repair. A direct Cordis patch without a preceding
insertion configures nothing, so a direct-only registration reads as
absent even when its config matches and the repair appends the insert.
Caller-owned config fields beyond the REA-owned keys, such as the cwd
the native verifier sets, survive a refresh instead of being silently
dropped.
* fix(setup): preserve Cordis tags and collapse aligned Harness rows
A refresh rebuilt Harness config from parsed values, so a caller !!js
expression was written back as a literal. Owned keys are now overlaid on
the winning config node and other nodes stay in place. Two already-aligned
rea-mcp insertions read as stale, so setup collapses them to one row, and
the bundled skill lists dsh with the other clients.
* fix(setup): drop the unused DSH configuration type
Knip reports DshConfigurationFormat as an unused export. The format union
does not depend on that alias.
* fix(setup): keep Harness env tags and comment-only patches
A refresh replaced the whole env map, so a caller !!js value was written
back as a literal. Environment entries now stay in place unless the value
changed. A comment-only cordis.patch.yml parses as an empty patch list and
keeps those comments when the registration is appended. Docs describe
plain rea uninstall, which scans supported clients and has no --client flag.
* fix(setup): own Harness rows by entry id and expression state
Uninstall removes a rea-mcp row even when the launcher is stale or the
patch never established a server record. A non-boolean disabled value,
including a Cordis expression, reads as stale. Expression text on a known
environment setting is not validated as a literal path, so a refresh can
keep the tag.
* fix(setup): collapse aliased Harness insertions
An anchored insert followed by an alias parses as two rea-mcp rows, but
the YAML edit kept the alias, so readback stayed duplicated and setup
restored the file. Aliases that resolve to the owned entry are now
dropped, including an alias of the entry inside one insert. Aliases of
other patches stay.
* fix(setup): resolve aliased Harness lists and config maps
An insert value that aliases another entry list still loaded a second
rea-mcp row after the operation-level alias collapse. That alias is now
dropped once the anchored list is rewritten. A config: *cfg map is
resolved and cloned before the refresh, so a caller !!js field on the
aliased map is not rewritten as a plain literal.
* fix(setup): follow Harness aliases for ids, lists, and env tags
An insert alias whose anchor is not another insert is copied so
unrelated rows stay while the owned row is rewritten. An aliased
entry id is resolved before ownership checks, and an environment alias
of an unchanged !!js scalar is left in place.
* fix(setup): keep aliased Harness env maps through uninstall
An env alias is cloned before a refresh so tagged values are not rebuilt
as literals, and expression-key scans follow aliases before path checks.
Insert aliases that carry REA are recorded before uninstall empties their
anchor, so the later alias is dropped instead of dangling.
* fix(setup): follow root Harness aliases and mark dsh as main-only
Winning-config walks resolve a root alias before patch order, so a replayed direct config's !!js env is not validated as a literal path. Root aliases that own rea-mcp are recorded before uninstall empties their anchor. An insert whose only owned member is an external alias is cloned so Cordis tags survive. Docs state dsh is not in npm 6.4.0.
* fix(setup): keep rows behind inert Harness aliases
A root alias whose anchor is not a loaded operation is copied and only the owned row is edited, so unrelated rows stay active. Entry id aliases become a scalar before their anchor patch is dropped. Root-alias ownership follows insert-list aliases, so a replay is removed instead of dangling after uninstall.
* refactor(setup): centralize Cordis source ownership
* fix(javascript): share Electron mutation proof with wrapped calls
* test(mcp): align graph and catalog checks with current contracts
* fix(setup): separate Cordis ownership from editability
* docs: clarify ownership and interpretation boundaries
* fix(setup): preserve Cordis applicability and caller metadata
---------
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Thread the existing resource scope through skill and client configuration reads. Keep failed-close handles owned, wait for admitted reads, and surface unresolved cleanup alongside doctor, uninstall and update results.
Validated focused setup/doctor/update and filesystem boundary checks, temporary-file hygiene, packaged setup/update/uninstall workflows, and static checks. No external provider installation was performed.
* fix: order remaining outputs independently of host locale
String.prototype.localeCompare without a pinned collation follows the
host's ICU default locale, so the same input could be ordered differently
on different machines. 614fb768 moved canonical domain projections to
compareUnicodeCodePoints; provider, application, catalog, and setup
orderings still used locale collation.
Order every remaining source site by Unicode code point, including Mach-O
symbols, firmware extraction paths, ASAR entries (previously pinned to
"en" collation), evidence ID sets, browser and Electron target, script,
and resource inventories, reconstruction obligations, capability and
provider listings, and setup environment details.
The current tool and prompt catalog names order identically under both
comparators, so the catalog identity digest is unchanged.
* fix(artifacts): order ASAR entries by their portable path
@electron/asar lists host-spelled paths, so code-point order over the raw
spelling still differed by host: "a\b" sorts after "a0" on Windows while
"a/b" sorts before it on POSIX. Pair each listing with its portable
archive path once, order by that path, and keep the host spelling for
@electron/asar calls and adapter keys.
Setup run through bunx or bun x registered the bin inside bun's temporary
package cache. Detect bun's package-runner launch from npm_command=exec
with a bun user agent and register the pinned bunx launcher, wrapped in
cmd.exe on Windows like the npx launcher. Doctor, update maintenance and
uninstall recognize it as REA-owned, and setup's printed commands name
the runner that launched it.
Read the runner variables case-insensitively on Windows, where the CLI
environment snapshot upper-cases variable names and setup run through
npx also fell back to the cache path.
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
* refactor(setup): resolve skill destinations per client
* fix(setup): honor active client configuration and skill roots
* fix(setup): validate effective client scopes and Gemini trust
* fix(setup): treat empty OpenCode overrides as unset
An empty OPENCODE_CONFIG_DIR now stays on the XDG directory, and doctor
and setup inspect global OpenCode files when a custom directory is absent.
Uninstall reports one status per client so a missing earlier layer does
not hide a removed registration.
---------
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
* feat(setup): add native Pi client support
* fix(setup): isolate invalid Pi agent directory overrides
Keep malformed Pi path evidence on its client entry so unrelated selected clients can complete setup and doctor. Preserve explicit Pi rejection and block filesystem operations rather than falling back to another directory.
* fix(setup): parse Pi configuration as strict JSON
Pi's installed MCP loader reads mcp.json with a bare JSON.parse and no
BOM tolerance, so comments, trailing commas, a BOM, or an empty existing
file yield loader errors and no servers. Parsing the Pi dialect with
objectSchema.parse(JSON.parse(text)) before the shared empty/JSONC
shortcut rejects those files at every mutation boundary instead of
reporting configured registrations Pi cannot load. A missing file still
initializes a fresh strict-JSON document, other dialects keep their
JSONC/BOM/empty tolerance, and malformed files are never rewritten.
---------
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
* feat: add Hermes as a supported MCP client
Hermes Agent reads stdio MCP servers from `mcp_servers.<name>` in
`config.yaml`. REA had no Hermes client, so setup could not register it and
Hermes users had to wire the server up by hand.
- SupportedClients: add the `hermes` format and client definition, resolving
the config path from HERMES_HOME, else the platform default that Hermes's own
resolver uses (LOCALAPPDATA/hermes on Windows, ~/.hermes elsewhere), including
HERMES_DATA_DIR_SUFFIX.
- ClientConfigurationDocument: parse and serialize Hermes YAML, upserting the
rea entry into the parsed document so user comments and unrelated settings are
preserved; emit `enabled: true` since Hermes connects entries unless disabled.
- ClientRegistrationStatus: forward the Hermes location variables so status
checks resolve the same path as setup.
- Tests: cover path resolution on both platforms and the register/read/uninstall
round trip, and clear the Hermes location variables between tests.
- delilah 🌸
* docs: document the Hermes client and its config path
- delilah 🌸
* refactor(setup): resolve skill destinations per client
* fix(setup): install Hermes skills in the active profile
* fix(setup): identify each client skill action uniquely
---------
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
* feat(setup): register OMP during setup
Add OMP (oh-my-pi) as a setup, doctor and uninstall client. Setup writes
a type: stdio entry to the user-level agent mcp.json that OMP reads,
following PI_CONFIG_DIR, an absolute PI_CODING_AGENT_DIR and the
OMP_PROFILE/PI_PROFILE named profile. It removes rea from OMP's
disabledServers denylist, which would otherwise hide the registration,
and doctor reports a listed registration as stale.
Closes#1257
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix(setup): honor OMP's enabledServers allowlist in doctor
OMP's user enabledServers allowlist forces an entry with enabled: false
on, unless disabledServers also lists it. Doctor reported such a working
registration as stale. Also format the FAQ client list.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix(setup): keep OMP's allowlisted entry in update maintenance
rea update skipped an owned OMP entry with enabled: false even when
OMP's enabledServers allowlist runs it. Apply the same forced-enable rule
as doctor. Share the client-location environment reset across the client
tests instead of repeating it in each file.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
* feat(clients): register Grok Build and Grok Bot during setup
Detect both clients and install the local REA MCP registration the same
way setup already handles the other agents. Grok Build edits only the
REA tables in its TOML config and sets startup_timeout_sec to 30. Grok
Bot writes the mcpServers.rea entry into mcp.json. That file is the
registration to add to the signed-in account; setup does not call the
account API.
Filed by Grok.
* fix(clients): clear a disabled Grok Build registration during setup
Grok Build keeps a server suppressed when its name stays in
disabled_mcp_servers, and setup was treating that file as already aligned.
Setup now removes only that name, doctor reports the registration stale until
it is gone, and uninstall keeps comments in an inline table whose only server
was REA. Split the lifecycle suite and reflow the get-started page so static
checks pass.
* fix(verify): check packed Hopper search as literal-only
The package verifier still called a regex probe that main deleted. The
native bridge refuses regex and joins string hits with typed records, so
the restored probe stubs that inventory and the check asserts the literal
matches and the regex refusal. The new README translations also name
Grok Build and Grok Bot.
* fix(clients): stop treating a Grok Bot data directory as registered
Grok Bot stores connectors in the signed-in account and runs them on its
hosted computer. Setup no longer writes mcp.json or reports that file as
aligned. Doctor and setup tell the caller to add the server from the
Grok Bot chat.
* fix(clients): drop multiline Grok disable-list entries
Decode disabled_mcp_servers strings with the document parser so a
multiline basic or literal string that loads as rea is removed.
---------
Co-authored-by: Grok <eugene.ray@gmail.com>
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: morluto <morluto@users.noreply.github.com>
OpenCode V2 reads native server entries from mcp.servers, and a native
entry takes precedence over a V1 mcp.<name> entry. After OpenCode
migrated a configuration, setup wrote an ignored V1 entry, status
reported REA as missing, and uninstall left the native entry in place.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* refactor(domain): split error taxonomy into thematic modules
Move each error family out of domain/errors.ts into its own module
(base, core, provider selection/adapter, browser observation,
artifact, evidence, unknown registry, hopper, configuration) and
relocate AnalysisErrorProjection to analysisErrorProjection.
Migrate all 162 importers to the owning modules and delete
errors.ts. No re-export shims; behavior is unchanged.
* refactor(runtime): name all silent catch causes without changing diagnostics
Bind cause in every bare catch and unhandled rejection across src/.
Real failures preserve the cause for logging; best-effort cleanup
carries an explicit comment. Caller-visible and Evidence strings are
byte-identical to before.
* fix(comparisons)!: preserve unknowns across partial observations
Share absence and digest semantics, keep unobserved managed bodies unknown, and match unique managed type/name/signatures before structural fallback.
BREAKING CHANGE: Managed comparison metadata adds exact-signature matching and its count, and name_matching now reports exact-signature-fallback.
* fix(javascript): preserve projected result binding semantics
Share syntax-aware property reads and assigned-result resolution. Retain destructuring paths and downgrade downstream whole-result relationships instead of resolving nested or wrapped calls as aliases.
* fix(native)!: admit complete parser values and preserve typed failures
Decode Mach headers by named columns, validate complete slice keys and lipo alignment, and preserve codesign runtime flags and tagged parser errors. Rename the Ghidra test dossier fixture and connect fake-backed suites to real verification lanes.
BREAKING CHANGE: Native load-command results no longer contain the unused, always-null file_offset field.
* fix(process): preserve host identity and actionable boundary failures
Thread selected platform and environment through process and Doctor seams, stamp observed producer identity in Evidence, and retain PTY, filesystem, lease and lazy-provider failure causes. Drain cancelled lazy loads and omit exited descendants from verified lineage.
* fix(browser): preserve cleanup and document-transition evidence
Make V8 and Playwright teardown cancellation-aware, expose primary failures alongside incomplete cleanup, share frame-tree and navigation rules, and clear stale WebMCP registrations without pruning unrelated child frames.
* fix(adapters): align managed targets and typed CLI outcomes
Inspect managed PE/CLI targets independently of native provider selection, reuse successful managed selections, and keep evidence bound to the actual inspected target. Classify canonical CLI error envelopes and exhaustive setup/update/uninstall outcomes, audit registered CLI coverage, and assert platform-specific runtime results.
* docs: refresh boundary contracts and shipped roadmap behavior
* feat(setup)!: expand agent integrations and simplify onboarding
Add native configuration formats for OpenCode, Antigravity, GitHub Copilot
CLI, VS Code, and Devin. Preserve JSONC comments and unrelated settings
while making setup and uninstall ownership-aware and idempotent.
Select agent targets before planning, separate discovery from intent, and
keep agent-only setup independent of optional provider prerequisites.
Cover configuration boundaries and interactive behavior in packaged checks.
BREAKING CHANGE: unscoped setup refreshes only existing REA-owned
registrations. Use --all-detected to configure every detected client.
Setup JSON contains a compact doctor summary; use rea doctor for full
diagnostics. Cancellation and successful dry runs now exit successfully.
* feat(cli)!: replace upgrade with verified updates
Resolve an exact release through npm's configured registry, update only the
identified installation, and verify its new executable before reporting success.
Return a read-only maintenance plan for existing enabled REA integrations.
BREAKING CHANGE: replace rea upgrade with rea update; no alias is retained.
Successful update JSON uses status "updated", reports the verified installed
version, and returns an unapplied maintenance plan instead of opening setup.
* refactor(test): colocate pure-domain tests and reduce test debt
Move focused immutable domain/contracts/adapter tests from
tests/composition/** beside their production owners under src/** as
colocated *.test.ts/*.fixture.ts, and relocate persistence-shaped
composition tests under tests/boundary/filesystem/**. Update import
paths, the Vitest project topology (shared worker context for pure
domain/contracts and recording-port service projects), the test
migration ledger, testing docs, and AGENTS.md to match.
Generated with [Devin](https://devin.ai)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
* docs: remove test migration ledger
The cutover is complete and the ledger is no longer referenced anywhere
in source, scripts, or the docs gate. Drop the standalone artifact.
Generated with [Devin](https://devin.ai)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
* docs: clean up stale migration artifacts
Remove empty directories left by the test migration and replace the
"final cutover" language in docs/testing.md with standing PR guidance
that no longer references the completed migration.
Generated with [Devin](https://devin.ai)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
* fix: repair CI failures from schema, knip, and stale generated artifacts
Three root causes fixed:
1. catalog-schemas.mjs: valuesAt only traversed anyOf from Zod's
toJSONSchema, not oneOf. The webScreenshotDiffSchema change to a
discriminated union produces oneOf, so the product catalog generator
could not derive the web_screenshot_diff schema version. Add oneOf
traversal.
2. conformancePackage.ts: the test rewrite removed the only imports of
ScenarioManifest, ReplayPlan, ShimPlan, and ExpectedEvidence, making
them unused exports that knip flags. Remove the dead type aliases.
3. Regenerate stale artifacts (product catalog, MCP tool catalog, skill
metadata, conformance manifest) that drifted from the source changes.
Generated with [Devin](https://devin.ai)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
---------
Co-authored-by: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
morluto