Commit Graph

13 Commits

Author SHA1 Message Date
morluto d818c3d263 fix(doctor): preserve unresolved client configuration evidence
Use entry metadata to discover registration evidence independently of target
readability. Preserve failed metadata inspection as a named invalid diagnostic
instead of treating all lookup failures as absence. Remove the duplicate
boolean existence wrapper; configuration parsing remains the read owner.

Cover native permission-denied targets and metadata, dangling configuration
entries, maintenance exclusion, and public doctor output without mutation.

Validation: 73 focused tests across four files, check:fast, format:check,
and six isolated completed public doctor cost comparisons passed on macOS
arm64 / Node24.18.0. Native Windows/Linux permissions were not verified;
POSIX permission controls skip unsupported hosts and root.

Fixes #4905
2026-10-18 07:10:44 +08:00
morluto 19329e43bb fix(setup): preserve launcher identity and uncertainty
Use one registration classifier for doctor, maintenance and uninstall.
Preserve unknown identity when launcher resolution fails, and compare native
paths without collapsing symlink traversal. Keep Node argv script selection
separate; ambiguous direct-launch interpretations cannot authorize removal.
Remove the superseded boolean ownership parser.

Validation: 183 focused tests passed, 2 Windows cases skipped; check:fast
and docs:check passed. Five public regressions fail on the baseline, including
foreign registration removal in an isolated fixture. Source review and authored
Node shebang controls completed on macOS with Node 24.18.0. Native Windows,
Linux and real mise upgrades remain unverified.

Closes #4895
Closes #4896
2026-10-18 06:18:34 +08:00
morluto dadf909dce fix(setup): derive MCP tool deadlines and preserve caller timeout choices 2026-10-15 05:05:24 +08:00
morluto 187f113f79 fix(identity)!: preserve invocation uncertainty and advertised catalogs
Capture the current entrypoint once without inventing a path. Preserve unknown registration ownership through setup and doctor, refuse unsafe registration plans, and retain exact pinned-launcher readiness checks. Hash the same full or compact schema projection advertised by each MCP server and use that identity in doctor comparisons.

BREAKING CHANGE: server.command_path may be null when the invocation path is unavailable. Registration and setup statuses, and doctor classifications, may report unknown.

Reviewed-PR: #3230, #3015
Co-authored-by: qorvr <330186599+qorvr@users.noreply.github.com>
Co-authored-by: Hemang Varshney <218273197+hemv-857@users.noreply.github.com>
2026-10-14 16:10:46 +08:00
morluto ec56c1da04 fix(setup): preserve registration identity and recovery ownership
Keep layered environment choices, current byte-exact recovery snapshots, and package-manager failure details. Report pinned package drift without claiming runner resolution. Retain failed Linux installer cleanup for host-owned retry while preserving the install outcome.

Reviewed fixes include #2632, #2769, #2783, #2959, #2979, #2983, #2995, #3009, and #2559.

Validation: 98 focused setup/registration tests passed; 45 Linux installer tests passed. Real Linux package installation remains unverified.
2026-10-14 08:25:53 +08:00
Kaoru0822 8b4c359135 feat(setup): register OMP during setup (#1301)
* feat(setup): register OMP during setup

Add OMP (oh-my-pi) as a setup, doctor and uninstall client. Setup writes
a type: stdio entry to the user-level agent mcp.json that OMP reads,
following PI_CONFIG_DIR, an absolute PI_CODING_AGENT_DIR and the
OMP_PROFILE/PI_PROFILE named profile. It removes rea from OMP's
disabledServers denylist, which would otherwise hide the registration,
and doctor reports a listed registration as stale.

Closes #1257

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(setup): honor OMP's enabledServers allowlist in doctor

OMP's user enabledServers allowlist forces an entry with enabled: false
on, unless disabledServers also lists it. Doctor reported such a working
registration as stale. Also format the FAQ client list.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(setup): keep OMP's allowlisted entry in update maintenance

rea update skipped an owned OMP entry with enabled: false even when
OMP's enabledServers allowlist runs it. Apply the same forced-enable rule
as doctor. Share the client-location environment reset across the client
tests instead of repeating it in each file.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-09 08:51:12 -07:00
morluto 08561e0eb7 feat(clients): register Grok Build and Grok Bot during setup (#1134)
* feat(clients): register Grok Build and Grok Bot during setup

Detect both clients and install the local REA MCP registration the same
way setup already handles the other agents. Grok Build edits only the
REA tables in its TOML config and sets startup_timeout_sec to 30. Grok
Bot writes the mcpServers.rea entry into mcp.json. That file is the
registration to add to the signed-in account; setup does not call the
account API.

Filed by Grok.

* fix(clients): clear a disabled Grok Build registration during setup

Grok Build keeps a server suppressed when its name stays in
disabled_mcp_servers, and setup was treating that file as already aligned.
Setup now removes only that name, doctor reports the registration stale until
it is gone, and uninstall keeps comments in an inline table whose only server
was REA. Split the lifecycle suite and reflow the get-started page so static
checks pass.

* fix(verify): check packed Hopper search as literal-only

The package verifier still called a regex probe that main deleted. The
native bridge refuses regex and joins string hits with typed records, so
the restored probe stubs that inventory and the check asserts the literal
matches and the regex refusal. The new README translations also name
Grok Build and Grok Bot.

* fix(clients): stop treating a Grok Bot data directory as registered

Grok Bot stores connectors in the signed-in account and runs them on its
hosted computer. Setup no longer writes mcp.json or reports that file as
aligned. Doctor and setup tell the caller to add the server from the
Grok Bot chat.

* fix(clients): drop multiline Grok disable-list entries

Decode disabled_mcp_servers strings with the document parser so a
multiline basic or literal string that loads as rea is removed.

---------

Co-authored-by: Grok <eugene.ray@gmail.com>
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: morluto <morluto@users.noreply.github.com>
2026-10-09 06:08:29 +08:00
morluto 5a0e0ba3b8 fix: address review nits from batch integration follow-ups (#818)
- browser: reject empty Referrer-Policy tokens structurally while
  still skipping them per W3 fallback semantics.
- browser: document that WebMCP keys cannot collapse since unknown
  frames are excluded before keying.
- ghidra: split NativeAOT non-recovery diagnostics into
  reason-missing vs payload-present variants with exact assertions.
- reference: lock secret-patterned exclusion before failure
  projection so failure messages cannot carry secret paths.
- doctor: lock direct-launcher Codex timeout ordering both ways.
- native: note plutil -n macOS 12+ requirement; add fat-output
  control guarding the thin pre-scan.
- reconstruction: multi-unknown limitation coverage via shared helper.

Tracks #817 for the remaining smol-toml advisory.
2026-10-07 10:49:23 +08:00
morluto 3af3811ab0 fix: integrate 24 reviewed browser/native/semantics corrections (#815)
* fix(reference): resolve emitted extensions to TypeScript source

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* test(reference): retain legitimate declaration import counterparts

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* fix(mcp): recognize implicit form elicitation capability

Signed-off-by: RudyCelekli <47457359+rudycelekli@users.noreply.github.com>

* fix(ghidra): reject contradictory NativeAOT reports

* fix(native): preserve thin architectures across echoed filename lines

Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>

* fix(native): preserve app bundle executable filename whitespace

Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>

* fix(doctor): validate Node-wrapped client policy

Signed-off-by: RudyCelekli <47457359+rudycelekli@users.noreply.github.com>

* fix(reference): preserve observed entry failure reasons

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* fix(artifacts): verify opaque bytes before reusing inventory identities

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* fix(browser): resolve DOM destinations against document base URL

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* fix: recover serialized native NIB view hierarchy

Signed-off-by: RudyCelekli <47457359+rudycelekli@users.noreply.github.com>

* ci: exercise native compiled NIB hierarchy regressions

Signed-off-by: RudyCelekli <47457359+rudycelekli@users.noreply.github.com>

* fix(deps): remediate reachable archive-parsing advisories

Two high-severity advisories are reachable from untrusted target content:

- @xmldom/xmldom 0.9.10 (via plist) parses XML plist bytes from analyzed
  app bundles in the keyed-archive reader. Refreshed to 0.9.12.
- brace-expansion 5.0.7 (via @electron/asar -> minimatch) is reached while
  analyzing untrusted ASAR archives. Refreshed to 5.0.12.

Both are in-range patch updates (plist declares ^0.9.10, minimatch declares
^5.0.5), so no source or API change is required and no direct dependency
declaration moves. Lockfile-only change.

The remaining smol-toml advisory is not included: it parses operator-owned
client configuration rather than untrusted target content, and its fix moves
outside the declared range and changes leading-BOM handling.

* fix(semantics): link wrapped arrow Promise returns

* fix(reconstruction): preserve unknown graph limitations

* fix(native): preserve exact code signing identifiers

Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>

* fix(native): recognize only whole otool command headers

Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>

* fix(native): retain nm-proven literal export names

Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>

* fix(javascript): project decoded file URL paths

Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>

* fix: preserve explicit source-relative URL observation spelling

Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>

* fix(native): project Mach-O evidence into container file offsets

Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>

* fix(browser): normalize referrer policy fallback lists

Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>

---------

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>
Signed-off-by: RudyCelekli <47457359+rudycelekli@users.noreply.github.com>
Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>
Co-authored-by: Rudy Celekli <rudy@gradiahq.com>
Co-authored-by: RudyCelekli <47457359+rudycelekli@users.noreply.github.com>
Co-authored-by: Kaoru0822 <aisakamimaki@gmail.com>
Co-authored-by: DeryFerd <deryferdikao125@gmail.com>
2026-10-07 10:33:10 +08:00
I Made Ocy Darma Putra 7f1ae42f71 feat(setup): support Command Code MCP registration (#645)
Configure Command Code's user-scope MCP config (~/.commandcode/mcp.json)
with an explicit stdio registration ({ transport, enabled, command, args })
under mcpServers, matching the shape Command Code writes itself.

Adds the commandcode setup client and dialect, detection/alignment support,
README/docs entries, and regenerated product catalog.
2026-10-06 14:15:59 +08:00
morluto 6256b68666 feat(setup)!: expand agent integrations and verify updates (#577)
* feat(setup)!: expand agent integrations and simplify onboarding

Add native configuration formats for OpenCode, Antigravity, GitHub Copilot
CLI, VS Code, and Devin. Preserve JSONC comments and unrelated settings
while making setup and uninstall ownership-aware and idempotent.

Select agent targets before planning, separate discovery from intent, and
keep agent-only setup independent of optional provider prerequisites.
Cover configuration boundaries and interactive behavior in packaged checks.

BREAKING CHANGE: unscoped setup refreshes only existing REA-owned
registrations. Use --all-detected to configure every detected client.
Setup JSON contains a compact doctor summary; use rea doctor for full
diagnostics. Cancellation and successful dry runs now exit successfully.

* feat(cli)!: replace upgrade with verified updates

Resolve an exact release through npm's configured registry, update only the
identified installation, and verify its new executable before reporting success.
Return a read-only maintenance plan for existing enabled REA integrations.

BREAKING CHANGE: replace rea upgrade with rea update; no alias is retained.
Successful update JSON uses status "updated", reports the verified installed
version, and returns an unapplied maintenance plan instead of opening setup.
2026-10-05 23:06:19 +08:00
morluto 2160d4fae5 fix: consolidate boundary ownership and cleanup failure paths (#477) 2026-09-08 10:59:13 +08:00
morluto e91c8c39c2 refactor(test): colocate pure-domain tests and reduce test debt (#471)
* refactor(test): colocate pure-domain tests and reduce test debt

Move focused immutable domain/contracts/adapter tests from
tests/composition/** beside their production owners under src/** as
colocated *.test.ts/*.fixture.ts, and relocate persistence-shaped
composition tests under tests/boundary/filesystem/**. Update import
paths, the Vitest project topology (shared worker context for pure
domain/contracts and recording-port service projects), the test
migration ledger, testing docs, and AGENTS.md to match.

Generated with [Devin](https://devin.ai)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>

* docs: remove test migration ledger

The cutover is complete and the ledger is no longer referenced anywhere
in source, scripts, or the docs gate. Drop the standalone artifact.

Generated with [Devin](https://devin.ai)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>

* docs: clean up stale migration artifacts

Remove empty directories left by the test migration and replace the
"final cutover" language in docs/testing.md with standing PR guidance
that no longer references the completed migration.

Generated with [Devin](https://devin.ai)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>

* fix: repair CI failures from schema, knip, and stale generated artifacts

Three root causes fixed:

1. catalog-schemas.mjs: valuesAt only traversed anyOf from Zod's
   toJSONSchema, not oneOf. The webScreenshotDiffSchema change to a
   discriminated union produces oneOf, so the product catalog generator
   could not derive the web_screenshot_diff schema version. Add oneOf
   traversal.

2. conformancePackage.ts: the test rewrite removed the only imports of
   ScenarioManifest, ReplayPlan, ShimPlan, and ExpectedEvidence, making
   them unused exports that knip flags. Remove the dead type aliases.

3. Regenerate stale artifacts (product catalog, MCP tool catalog, skill
   metadata, conformance manifest) that drifted from the source changes.

Generated with [Devin](https://devin.ai)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>

---------

Co-authored-by: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-08-10 14:57:44 +08:00