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a425b3e528
Select file and slice identity once before Android, Apple and Harmony classification. Keep directory/link facts in source inventory and Apple anatomy rather than deriving code roles, runtime hints or bridges from them. Preserve occurrence order, multiplicity and existing unavailable facts. Adapt @flyl1u's proposal and public CLI/stdio MCP controls from PR #3830, extending the controls and structural fix to Apple and slice/link semantics. Validation: 80 focused checks, build, check:fast and docs:check pass. Four package controls fail before the fix. 72 tiny completed source cost tasks preserve all regular-file control replies and projection IDs byte for byte. No heavy profiling, target or real deep-provider execution; full agent/public-task costs and published npm package unverified. Fixes #3349