BREAKING CHANGE: Filesystem digest omission entries now require system_code; budget and changed-file omissions use null, and unavailable-file omissions preserve the operating-system error code.
Reject omitted segment bounds, procedure classification and body facts, unresolved-call observations, dossier facets, and Ghidra parameter flow metadata. Providers emit explicit nulls for unsupported facets. Verify those unknowns in the real Hopper workflow.
BREAKING CHANGE: Provider analysis outputs must explicitly supply metadata previously repaired with defaults; unsupported nullable facets must be reported as null.
Intern shared provenance in a graph-scoped context registry while retaining exact locations on every fact. Semantic traces carry their referenced context subset, and portable graph validation rejects stale or dangling commitments.
BREAKING CHANGE: Semantic graph facts now store evidence context IDs and locations. Graph and semantic trace results require an inline evidence_contexts table.
BREAKING CHANGE: source-map URLs now live in target observations selected by declared_url_sha256, and doctor skill identity no longer emits installed_catalog_digest. Use the documented observation join and identity.skill.state instead.
The generated skill rewrote `rea-agents@latest` to the version it ships with, so a pinned install no longer needs a local edit that `doctor --skill` reports as stale.
Co-Authored-By: OpenCode <opencode@opencode.ai>
relationshipSignature rebuilt a node map and scanned every graph edge
for each side of each matched pair, so comparison cost grew as
pairs x (nodes + edges). Build node and adjacency indexes once per
graph in ItemContext; signatures, sorting and output are unchanged.
At 4000 matched modules, end-to-end compare: 5.7s -> 2.9s (2 edges
per node) and 10.4s -> 5.8s (6 edges per node); 8000: 3.3x and 2.5x.
Output JSON is byte-identical on the base commit.
Use the equivalent hex NUL spelling in named public contracts while preserving current path and reserved-name validation. Verify converted JSON Schema and real stdio catalog consumers.
Closes#1329
Co-authored-by: Yi-111-a <97448247+Yi-111-a@users.noreply.github.com>
Verify selected files through a nonblocking opened handle before reading. Preserve regular-file symlinks and return actionable CLI/MCP diagnostics without publishing output.
Co-authored-by: YouWish <29498139+Y0UW1SH@users.noreply.github.com>
morluto